Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0054 ATGGCAATGATTATGCTTCATGGGACTCTCCATGCTACAATTTACGAAGTCGATACGATCAGTGGTGCCTCGGGTGGAAATCTTTTTACCATGATCAGGCAAAATATTGAGGAGACTGTTGGTATTGGAAAGGGAGCTCCAAAAATCTATGCAACTGTTGATTTAGAGAAAGCAAGAGTGGGAAGGACTAGGAAAATACTGAATGATCATAATCCAAAATGGAATGAGTCTTTTCACATTTACTGTGCCCATACAGCTTCAAATATCATATTCACTGTGAAAGATGATAATCCTATTGGGGCGACATTGATTGGAAGAGCATATGTGCCTGTGGAGGAGAAAGATCGATGCTGGGGTCGAGGCATTAGGAGTCCTAAGTTTCCTGGAGTTCCCTATACCTTCTTTGCACAAAGACAAGGATGCAGGGTATCTCTGTACCAAGATGCTCATGTGCCTGAAAACTTTATCCCTAAGATTCCACTTGCTGGAGGGAAGACTTATGAGCCTCACAGGTGCTGGGAGGATATTTTTGATGCAATCACAAATGCAAAACACTTGATATACATTACTGGTTGGTCTGTTTATACCGAGATTTCCTTGGTAAGGGATTCTAGGAGGCCAAAGGCCGGTGGAGATTCAACACTCGGCGAGCTTCTTAAGAAGAAGGCAAGTGAAGGTGTTAAGGTGTTGATGCTTGTTTGGGACGATAGAACATCGGTTGGTTTGTTGAAAAAAGATGGATTGATGGCTACTCATGATGAAGAAACAGCACAGTTCTTCTCTAACACTCAAGTAAACTGTTGTTTATGCCCCCGAAATCCTGATGATGGAGGTAGCATTGTTCAGAGTTTCCAAATTTCTACCATGTTTACTCATCACCAGAAGATTGTTGTTGTGGACAGTGAGATGCCGGGTAAAGGATCACATATGCGAAGGCTTGTGAGTTTTGTTGGGGGTATTGATCTTTGTGATGGAAGATATGATACAGCATTCCACTCACTCTTCAGAACCTTAGACACAGCACACCATGATGATTTTCATCAACCTAACTTTCCTGGTGCTGATATCTCAAAAGGCGGTCCTAGGGAGCCTTGGCATGATATCCACTGCCGGCTCGAAGGGCCGGTAGCTTGGGATGTTCTGTTTAACTTTGAGCAGAGATGGAGGAGGCAAGGTGGAAAGGATGTACTTCTCCATATGAGAGAGCTCGAAAATTCCATTGTTCCCCCTTCCCCTGTGATGTTTCCTGAAGATCATGAGACATGGAATGTTCAGTTATTCAGATCAATTGATGGTGGTGCTGCTTTCGGTTTCCCTGATAGTCCTGAAGAGGCTGCCAAAGTAGGCCTTGTTAGTGGCAAGGATAACATCATAGACCGTAGTATTCAAGATGCTTATATCCATGCCATTCGCCGTGCCAAGAACTTCATCTATATCGAAAATCAGTACTTCCTTGGAAGCTCTTATAACTGGAAGCCTGAGGATATTAAGCCTGAAGATATTGGTGCTTTGCATCTAATTCCAAGGGAGCTTTCCCTTAAGATTGTTAGTAAGATTGAAGCCGGGGAACGATTTGCTGTGTATGTTGTGGTCCCAATGTGGCCGGAAGGTGTGCCGGAGAGTTCATCAGTTCAGGCTATATTGGACTGGCAAAGAAGGACAATGGAGATGATGTACAAGGACATTACTGAGGCTCTCCAAGCCAAGGGTATTGAGGACGATCCTCGGAACTATTTGACATTCTTCTGCCTTGGTAATCGCGAGGTGAAGAAGGATGGAGAGTATCAGCCTTCTCAAAAACCAGAGCCTGGTTCGGATTATGAGAACGCCCAAAAGGCGCGCCGCTTCATGATTTATGTTCATACCAAGATGATGATTGTTGATGATGAATACATAATTATCGGATCAGCCAACATCAACCAAAGATCAATGGACGGTGCGAGGGACTCCGAAATTGCCATGGGAGGTTACCAGCCTTACCACTTGGCAACCAGGCAGCCGGCGCGTGGCCAGATCCATGGTTTCCGAATGGCATTGTGGTATGAACACCTTGGCATGCTTCATGACTCATTCCTGAGGCCAGAAAGCAAAGAATGTATCAGCAGGGTGAACAAAGTTGCTGATCAGTATTGGGATCTCTTCTCTAAGGAGTCACTTGAGCATGACCTTCCCGGCCACCTGCTCCGATACCCGATCAGCGTTGCTAGTGAGGGACACATCACAACTCTTCCTGGATTCGAATGCTTCCCGGACACAAAAGCGCGAATTCTTGGCGCCAAAGCAGATTACCTGCCCCCTATCCTTACTACTTAG 2313 0.4522 MAMIMLHGTLHATIYEVDTISGASGGNLFTMIRQNIEETVGIGKGAPKIYATVDLEKARVGRTRKILNDHNPKWNESFHIYCAHTASNIIFTVKDDNPIGATLIGRAYVPVEEKDRCWGRGIRSPKFPGVPYTFFAQRQGCRVSLYQDAHVPENFIPKIPLAGGKTYEPHRCWEDIFDAITNAKHLIYITGWSVYTEISLVRDSRRPKAGGDSTLGELLKKKASEGVKVLMLVWDDRTSVGLLKKDGLMATHDEETAQFFSNTQVNCCLCPRNPDDGGSIVQSFQISTMFTHHQKIVVVDSEMPGKGSHMRRLVSFVGGIDLCDGRYDTAFHSLFRTLDTAHHDDFHQPNFPGADISKGGPREPWHDIHCRLEGPVAWDVLFNFEQRWRRQGGKDVLLHMRELENSIVPPSPVMFPEDHETWNVQLFRSIDGGAAFGFPDSPEEAAKVGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSYNWKPEDIKPEDIGALHLIPRELSLKIVSKIEAGERFAVYVVVPMWPEGVPESSSVQAILDWQRRTMEMMYKDITEALQAKGIEDDPRNYLTFFCLGNREVKKDGEYQPSQKPEPGSDYENAQKARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYHLATRQPARGQIHGFRMALWYEHLGMLHDSFLRPESKECISRVNKVADQYWDLFSKESLEHDLPGHLLRYPISVASEGHITTLPGFECFPDTKARILGAKADYLPPILTT* 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0054 770 Gene3D Endonuclease Chain A 162 407 - -
Amo02g0054 770 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 288 326 IPR001736 GO:0003824
Amo02g0054 770 CDD PLDc_pPLDalpha_2 454 663 - -
Amo02g0054 770 PIRSF PLD_plant 1 114 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Amo02g0054 770 PIRSF PLD_plant 112 770 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Amo02g0054 770 SUPERFAMILY Phospholipase D/nuclease 118 402 - -
Amo02g0054 770 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 616 643 IPR001736 GO:0003824
Amo02g0054 770 Pfam Phospholipase D C terminal 689 760 IPR024632 -
Amo02g0054 770 Gene3D Endonuclease Chain A 437 659 - -
Amo02g0054 770 PANTHER PHOSPHOLIPASE D 2 113 IPR015679 -
Amo02g0054 770 PANTHER PHOSPHOLIPASE D 114 770 IPR015679 -
Amo02g0054 770 CDD C2_plant_PLD 2 113 - -
Amo02g0054 770 Gene3D C2 domain 3 119 IPR035892 -
Amo02g0054 770 ProSiteProfiles C2 domain profile. 1 126 IPR000008 -
Amo02g0054 770 SUPERFAMILY Phospholipase D/nuclease 412 700 - -
Amo02g0054 770 SMART pld_4 616 643 IPR001736 GO:0003824
Amo02g0054 770 SMART pld_4 288 326 IPR001736 GO:0003824
Amo02g0054 770 PANTHER PHOSPHOLIPASE D ALPHA 1 2 113 - -
Amo02g0054 770 PANTHER PHOSPHOLIPASE D ALPHA 1 114 770 - -
Amo02g0054 770 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 5 115 IPR035892 -
Amo02g0054 770 Pfam Phospholipase D Active site motif 617 643 IPR001736 GO:0003824
Amo02g0054 770 Pfam Phospholipase D Active site motif 288 326 IPR001736 GO:0003824
Amo02g0054 770 Pfam C2 domain 44 113 IPR000008 -
Amo02g0054 770 SMART C2_3c 31 123 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0054 Amo-Chr2 674122 677754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0054 1 770 Phospholipase D Gene Family (Wang group) AT1G52570 76.790 0.0 1303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0054 K01115 - gmx:100786410 1379.39