Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0048 ATGAATAAAATTAACGAATCGAGGGGTGCATGTGGCTATGGTGATCTCTTTGAGCAAGGGTATGGTCTTATGACCACAGCTGTAAGCCCTGCCCTATTCAACAATGGTTACACATGTGGATCATGTTTTGAGATGAAATGTGTGAACAAGCCCAATTGGAATTATTGCAAAAAGGGCTCAAGCCCAATAAGAGTAACCGTAACAAACTTATGTCCACCAAATTATGGACAAGGTGATGGACATTGGTGCAACCCTCCATATAAACACTTTGATTTATCAATGAAGATGTTCACAACTATGGCAGAATATAGAGCAGGGATTGTACCTGTTTTATATAGAAGAGTTCCATGCCATAAACAAGGTGGTGTCAAGTTTCAGTTGAAAGGGACACCTTATTGGTTGCTTGTGTTGGTGTTCAATGTTGGTCATGTTGGTGATGTTTCTAGTGTTAGCATCAAAGGGCAAAATGGTAAATGGCTTACTATGTCAAAAAATTGGGGACAAAATTGGTTAATTGGAGTTAATTTGGTTGGACAAAGTTTGTCTTTTAAGGTCACAACTAGTGATCGGAAAACTTTGTTTGTACCTGTTTTATATAGAAGAGTTCCATGTCATAAACAAGGTGGTGTCAAGTTTCAGTTGAAAGGGACACCTTATTGGTTGCTTGTGTTGGTGTTCAATGTTGGTAATGCTGGTGATGTTTCTAGTTTGGGGACAAAATTGGTTAATTGGGGGTTAACTTGGTTGGACAAATCTTGTCTTTTAAGGTCAAAAGTCAAAACTAGTGATGGGAAAACCTTGGAGTTTGATGATGTTGCTCCTTCTAATTGGCAATTTGAACTAACTTATGAGGGCAAATATAACTTTTAG 870 0.3816 MNKINESRGACGYGDLFEQGYGLMTTAVSPALFNNGYTCGSCFEMKCVNKPNWNYCKKGSSPIRVTVTNLCPPNYGQGDGHWCNPPYKHFDLSMKMFTTMAEYRAGIVPVLYRRVPCHKQGGVKFQLKGTPYWLLVLVFNVGHVGDVSSVSIKGQNGKWLTMSKNWGQNWLIGVNLVGQSLSFKVTTSDRKTLFVPVLYRRVPCHKQGGVKFQLKGTPYWLLVLVFNVGNAGDVSSLGTKLVNWGLTWLDKSCLLRSKVKTSDGKTLEFDDVAPSNWQFELTYEGKYNF* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0048 289 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 8 122 IPR007112 -
Amo02g0048 289 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 132 285 IPR007117 -
Amo02g0048 289 PANTHER EXPANSIN-A21-RELATED 6 192 - -
Amo02g0048 289 SMART dpbb_1 25 112 IPR007112 -
Amo02g0048 289 PRINTS Expansin/Lol pI family signature 7 25 IPR007118 GO:0005576
Amo02g0048 289 PRINTS Expansin/Lol pI family signature 159 173 IPR007118 GO:0005576
Amo02g0048 289 PRINTS Expansin/Lol pI family signature 105 121 IPR007118 GO:0005576
Amo02g0048 289 PRINTS Expansin/Lol pI family signature 29 47 IPR007118 GO:0005576
Amo02g0048 289 SUPERFAMILY PHL pollen allergen 206 285 IPR036749 -
Amo02g0048 289 PANTHER EXPANSIN-A15 6 192 IPR002963 GO:0009664
Amo02g0048 289 Pfam Lytic transglycolase 26 112 IPR009009 -
Amo02g0048 289 PRINTS Expansin signature 80 97 IPR002963 GO:0009664
Amo02g0048 289 PRINTS Expansin signature 133 154 IPR002963 GO:0009664
Amo02g0048 289 PRINTS Expansin signature 20 34 IPR002963 GO:0009664
Amo02g0048 289 PRINTS Expansin signature 63 73 IPR002963 GO:0009664
Amo02g0048 289 PRINTS Expansin signature 97 110 IPR002963 GO:0009664
Amo02g0048 289 PRINTS Expansin signature 168 189 IPR002963 GO:0009664
Amo02g0048 289 PRINTS Expansin signature 121 133 IPR002963 GO:0009664
Amo02g0048 289 PANTHER EXPANSIN-A15 195 289 IPR002963 GO:0009664
Amo02g0048 289 PANTHER EXPANSIN-A21-RELATED 195 289 - -
Amo02g0048 289 Pfam Expansin C-terminal domain 123 193 IPR007117 -
Amo02g0048 289 SUPERFAMILY PHL pollen allergen 119 194 IPR036749 -
Amo02g0048 289 SUPERFAMILY Barwin-like endoglucanases 8 140 IPR036908 -
Amo02g0048 289 Gene3D - 1 118 IPR036908 -
Amo02g0048 289 Gene3D - 122 202 IPR036749 -
Amo02g0048 289 Gene3D - 206 289 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0048 Amo-Chr2 618945 626811 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0048 180 289 Expansin Gene Family AT5G39280 40.650 8.14e-22 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0048 - - mnt:112090940 282.337