Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4237 ATGGGGAGGCCACCTTGCTGTGAGAAAATTGGGATCAAGAAAGGGCCTTGGACTCCTGAGGAAGACATCATCTTAGTCTCTTATATTCAAGAACATGGACCTTCCAATTGGAGATCCGTTCCCACCAATACGGGGTTGATGAGATGCAGCAAGAGCTGCAGGCTTAGATGGACTAATTATCTTCGACCAGGTATCAAAAGAGGTAACTTCACCGACCATGAGGAGAAGATGATTATCCACCTCCAAGCCCTTTTAGGGAATAGATGGGCTGCTATAGCATCCTACCTTCCACAAAGAACAGACAATGATATTAAGAATTACTGGAACACGCATCTGAAGAAGAAGCTCGCCAAGAATCAAAGCGGAGCGGCCGAAGACGGCGGCGACTACCAAGATGGAAACTCTTCAAGATCCCAGCCAAAGGGACAGTGGGAGAGAAGGCTTCAGACAGATATTCACATGGCCAAACAAGCCCTGTCTGAAGCCTTGTCCCTCAGCAAATCCTCCAATAATAACAACAATATCTTATCTGAGTCCTCATCATCTTATGATGCTTCCACATTTAATTGGATGAAATCCCCGAACTCGTGTGCTGAAATGACCACGAATTCGGGAAATTCATTTAGTTCTAATAACAGCGAAGCAGATCATGGCTTTGATTCTCTCTTGAGCTTCAAATCCGACGATGAAAGGAAACCAAAGTACTTGTCCTCATCAGAGGCGCAGCAACAGGTGCCTCTAACGTTGCTCGAGAAGTGGCTCTTTGATGATGGTGCTGCTCAGTGCCATGAAGATCTTATGAACATGTCATTGGAGGAAAGTACTTCAGGTTTGTTCTAG 840 0.4548 MGRPPCCEKIGIKKGPWTPEEDIILVSYIQEHGPSNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLAKNQSGAAEDGGDYQDGNSSRSQPKGQWERRLQTDIHMAKQALSEALSLSKSSNNNNNILSESSSSYDASTFNWMKSPNSCAEMTTNSGNSFSSNNSEADHGFDSLLSFKSDDERKPKYLSSSEAQQQVPLTLLEKWLFDDGAAQCHEDLMNMSLEESTSGLF* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4237 279 CDD SANT 69 112 IPR001005 -
Amo01g4237 279 CDD SANT 16 61 IPR001005 -
Amo01g4237 279 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Amo01g4237 279 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Amo01g4237 279 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo01g4237 279 Gene3D - 13 66 - -
Amo01g4237 279 Gene3D - 68 141 - -
Amo01g4237 279 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo01g4237 279 MobiDBLite consensus disorder prediction 118 146 - -
Amo01g4237 279 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Amo01g4237 279 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 181 - -
Amo01g4237 279 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 181 - -
Amo01g4237 279 SMART sant 66 114 IPR001005 -
Amo01g4237 279 SMART sant 13 63 IPR001005 -
Amo01g4237 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Amo01g4237 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4237 Amo-Chr1 118071104 118072410 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g4237 1 167 MYB Transcription Factor Family AT5G62470 81.395 9.71e-100 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo01g4237 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4237 K09422 - gmx:100812460 367.466