Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4236 ATGAAAAAGCGGCAAGTGGTGATGAATCATGCTGCCAATAGCGGTGGATATGCCGTGGATGGTTGCAGAGAGTTCATGGCCAGCGCCGCCGAGGGAACCACCGGGGCTCTTACCTGCGCCGCTTGTGGCTGCCATAGAAACTTCCATAGAAGAAAGGAACTAGCTGCACCATCCAGACAAAATATATGGGAGACATAG 198 0.5253 MKKRQVVMNHAANSGGYAVDGCREFMASAAEGTTGALTCAACGCHRNFHRRKELAAPSRQNIWET* 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4236 65 PANTHER MINI ZINC FINGER PROTEIN 2 8 54 - -
Amo01g4236 65 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 3 52 IPR006456 -
Amo01g4236 65 Pfam ZF-HD protein dimerisation region 6 53 IPR006456 -
Amo01g4236 65 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 8 54 - -
Amo01g4236 65 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 8 52 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4236 Amo-Chr1 118042060 118045788 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g4236 9 52 ZF-HD Transcription Factor Family AT1G74660 79.545 2.89e-22 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Amo01g4236 ZF-HD_dimer 5.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4236 - - adu:107468004 127.102