Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4212 ATGCACCACGCAAACCACTACACCAAACGCCACGCGCCCAGTGTTTGCCTCCTTGATCCTCCTCCCGAATCAACGGCTCACATTTCTCAACACTGGAAACGTGCCGCCGCGCGTGCTATCCAGATTAAGTCCCGACGGGATGGTAGATTTGAAGTGAAGAGGTTCCACATTGGTCAGAAGCTTGTTAATCAAAAGGAAGGAGTGGTGACTTCCAAGGTATCAGAAACTGATTTGTCTTTAGATCCAACCCCCAATACCGTTGCCAAAAATGAGGAAGAGCTGGTGCTGGAGAATGATGAGTCAGAAACTGTTTTAAATGAAAATCAAGAAATAAACACAGTGGGATCTGTTCTCCAAGATTCACCACCTGATTCAGAGAAAATAAAGCTGGAGGAAGCAGCAACAAAGGCACAGGCTGCTTTCAGGGGTTACTTGGCACGAAGGGCATTTAGGGCCCTAAAAGGCATAATAAGGTTGCAAGCACTTATTCGTGGGCACCTTGTTAGGAGACAAGCTGTGGCTACATTATGCTGTATGTATGGCATTGTCAAGTTACAAGCACTTGTTCGTGGCAGAAGAGTCAGACAGTCTGTTGTTGGGTTTGAAATCCAAGAGAAGTGCAATCTATTGAAGTCTCCGGATGGCAAACCTGTCAAGCCAATTGCTGTACCTGCAAAAATTACAAATCTGTCAGCCAATGCTTTCATCCGAAAGCGTCTTGCTTCATCAACTACTATAATGGCCCTGCATTTGCAATATGTTCCTGGAGATCCAAATTCAGTTCTAAGCTGGTTGGAGCGCTGGTCAGCAACTAACTTTTGGAAACCAGTCCCCCAACCAAAGAAAATTCGAGACACTAAGCATCAGAGAAAGCAGGGTACTATTTCAGTGGGAGAAGCTCCATTGAGCAAGTCAAGACGTACCACCCGGAAGGTTCCTGCTGCAAGTTTTGACCCTGCCCCAGTGCAAGCAAATCCTGAACTTGAGAAGCCAAAACGAAGCTTGAGGAAAATTTCAAGCCAGCCCTCAGATACTCTGCAGGAAAACCCACAAAGTGAGCTTGAAAAGGTAAAGCGTAACTTGAGAAAGGTTCACAACCCAGTTGTTGAGAATGCTGTTGTCCCAGAAGTAGAACCCGAGGCCCCAAAGCAACATTTGGAAAAGGGGGCATTTACCCCAGTGCATGGTGTTTCGGAACAAGGGATAACTAGTTCTGATGAGAAGAATAACAAAGAACCAACTTTAACCATTTCCAATGTGCCCGATGCAGAACCTGCTACAAATTATATTAGTAAGGAGGTGTCTGATATGCCAAGCCATTATCAAGTGGTTGTGCAACCAAAGCCTTTGACCGAGATTATAAGTAAAGATGAAAACATTGCTGAAGATGAAGTGAAAACAGAGCCAAAAGATTTACCAGAGACTAGTTGCAAGGTTGAAAATTCTCACATAACAAATGGAGATTTGAGTCACAAGGAAGATCCTGTGGGAACTGAAAACCAGAAGCCGAACAGAAAGGCCTCAAATGTAGTGAAGCAAGAGCGTGCTGAGAATGGTTTACAGAACAGTCCAACTTTACCAAGTTACATGGCAGCAACTGAATCTGCCAAGGCAAAGTTGAGGGCTCAAGGATCCCCACGATTAGGACACGATGGAAGTGAGAGAAACAATGTTGCTCGGAGACATTCTCTGCCATCTTCAACTAACACCAAAATTAGCTCACAGTCACCTAGGACACAGAGACCAGTCCAATCAGGTGGCAAAGGAAGCAACAAACCTGTACCTTCTAGAGACGGCAATGGAAAGGTAATTCAAGCAGAATGGAGGAGGTGA 1833 0.4512 MHHANHYTKRHAPSVCLLDPPPESTAHISQHWKRAAARAIQIKSRRDGRFEVKRFHIGQKLVNQKEGVVTSKVSETDLSLDPTPNTVAKNEEELVLENDESETVLNENQEINTVGSVLQDSPPDSEKIKLEEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLCCMYGIVKLQALVRGRRVRQSVVGFEIQEKCNLLKSPDGKPVKPIAVPAKITNLSANAFIRKRLASSTTIMALHLQYVPGDPNSVLSWLERWSATNFWKPVPQPKKIRDTKHQRKQGTISVGEAPLSKSRRTTRKVPAASFDPAPVQANPELEKPKRSLRKISSQPSDTLQENPQSELEKVKRNLRKVHNPVVENAVVPEVEPEAPKQHLEKGAFTPVHGVSEQGITSSDEKNNKEPTLTISNVPDAEPATNYISKEVSDMPSHYQVVVQPKPLTEIISKDENIAEDEVKTEPKDLPETSCKVENSHITNGDLSHKEDPVGTENQKPNRKASNVVKQERAENGLQNSPTLPSYMAATESAKAKLRAQGSPRLGHDGSERNNVARRHSLPSSTNTKISSQSPRTQRPVQSGGKGSNKPVPSRDGNGKVIQAEWRR* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4212 610 MobiDBLite consensus disorder prediction 514 530 - -
Amo01g4212 610 MobiDBLite consensus disorder prediction 455 610 - -
Amo01g4212 610 Gene3D - 127 202 - -
Amo01g4212 610 ProSiteProfiles IQ motif profile. 130 158 IPR000048 GO:0005515
Amo01g4212 610 MobiDBLite consensus disorder prediction 455 477 - -
Amo01g4212 610 Pfam Protein of unknown function (DUF4005) 514 592 IPR025064 -
Amo01g4212 610 ProSiteProfiles IQ motif profile. 154 176 IPR000048 GO:0005515
Amo01g4212 610 MobiDBLite consensus disorder prediction 379 424 - -
Amo01g4212 610 Pfam IQ calmodulin-binding motif 132 151 IPR000048 GO:0005515
Amo01g4212 610 Pfam IQ calmodulin-binding motif 154 171 IPR000048 GO:0005515
Amo01g4212 610 SMART iq_5 129 151 IPR000048 GO:0005515
Amo01g4212 610 SMART iq_5 152 173 IPR000048 GO:0005515
Amo01g4212 610 MobiDBLite consensus disorder prediction 277 353 - -
Amo01g4212 610 MobiDBLite consensus disorder prediction 559 591 - -
Amo01g4212 610 PANTHER PROTEIN IQ-DOMAIN 31 55 593 - -
Amo01g4212 610 PANTHER IQ-DOMAIN 5-RELATED 55 593 - -
Amo01g4212 610 MobiDBLite consensus disorder prediction 397 424 - -
Amo01g4212 610 MobiDBLite consensus disorder prediction 485 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4212 Amo-Chr1 117729443 117735674 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g4212 59 610 IQD Protein Family AT1G74690 43.986 4.95e-122 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4212 - - ahf:112710449 1024.62