Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4202 ATGGAGTTTGCTGCTAGATCTGGTGATGATGGAGGTGATTCACCACTCAAGGAAGAGAAGAAGAGAAGTGACGAGTATACTGATGATGATGGTGGAAGCCATGGTGATCATCATGATCATGCTCCTTCTAATAAGCAAGACACAATAATTGTCAAGGAGCCGCCACACATGAATAAGACTGATAACAACACTGAAAAATCCATGGCGGAAGAAGCTTCTGGAACAAGCGCGCTATTGGCAGCCAAAAAGGAAGAGGTTATTGATAAACAACTTGAAAGCACTAAGGCTGAAATGGGTGAGGTTCGAGAGGAGAATGAACGGTTAAAGATGTCGTTGAACAAGATCATGAGCGAGTACCGAATGCTTCAAATGCAGTTTCACAACATAGTTAACAACAAGCATGAAGATAATCAAGAAACAATAATGGAGGAAGCAGACCTAGTTTCGCTCAGCCTTGGAAGAGTTCCAGTTCCAAGAAGAAGCAATGAAGAAGATAAAAAAGTCTCTGATAGTAACAAGAGMAAGAAGGAGGATGAAGATGATGAAGAATTGAATGAGGAATTGGCACTTGGATTGGACTGCAAGTTCGAAACTTCGAAATCGGGGAGCACAACGGAAGCTACCAATTTMCCGAATAATAGTAACAAGGAAGAAGGTGGTGAGAGTACATGGCCACCACCAGCAAGCAAGGCCAGAGAAGGTGGTGGCGGCGGTGGCGGTGGGGCAGCGGCATCGGCATCTGCATCAGTTGTAGAAGATGAAGTATCCCAACAGAATAATAATCCTGCTGCCAAGAAAGCTAGAGTTTGCGTCAGGGCAAGATGCGACACCCCGACTATGAATGATGGGTGTCAATGGAGGAAATATGGACAAAAGATTTCCAAGGGAAACCCATGCCCTCGAGCTTACTATCGTTGCACAGTTGCACCCTCGTGTCCCGTTAGGAAACAGGTGCAAAGGTGTGCGGAGGACATGTCGATTCTAATCACCACCTATGAAGGGAACCACAACCACCCTCTCCCTCTCACAGCCACCGCCATGGCTTCTACAACCTCCGCCGCCGCATCCATGTTACTTTCCGGCTCCTCAACCTCACACACTATGGCTCCCACAAACACGGCCACCGCGGCCGCAGCCGGCAACCTCCACGGCCTGAACCTCTACCTCCCAGACGGCTCAAAATCAAGACAAATATACGTCTCAAACCCCGCACTATCATCCACACCATCACACCCAACAATAACCCTTGACCTCACTTCTTCAAACCCTAATTTGAATAATAATAATTCCTCATCTCCATTTGTTAGGTTTTCTTCAAACTACCCTAACCAACCAATCAGATACCCTTCTTCCACAAGCCTTAGCTTCAGTACTTCCAACGATCCCAATCCACTTTCTTGGAGCAATAATGGATTCCTCAGTAGCTACAATAGTACTCATCATCAACCATTCAACAGAAGCATCAACATGCTCAGTAATAATAATTTGAACTTCGAAAGGCAACAACAACAACAAACAATGGAGAACTTCTATCAGTCTTTCATGCAAAGGAACAACAGCAAGAACGCATCATCATCATCATCATCATCATCATCATCAGATCCTATTGCCGCTGCAACAAAAGCAATAACAGCGGATCCCAGTTTTCAATCGGCTTTGGCTGCGGCCTTGTCTTCGTTCATTGGTGGCGGCAGCGGCATTGGAAGCACACATCATCAAGGGAATAATTATAACCAAGTTGGTGGTGGTGGTGGTGATGGAGAAAACAGTAATAAGATGAAATTTTCAGAGCTGTTTCCAGTTTCCTCTACCTTGGCTTCGAGTTCGAAAGTCATCAATAATAGTAACAATGGCGGATGTGGTTCGAGCTTCTTGAACAAAACGCAACCAACAAAAACAACACAGAATAATGGAAGCTTCATGTTTCTTCCACCTTCTTTGCCATTTTCTTCTMCTCCYAAGAGTGCTTCTGCATCTCCCGGTGATAATGGAGGTGATGATCATAGATCATCATGA 2016 0.4504 MEFAARSGDDGGDSPLKEEKKRSDEYTDDDGGSHGDHHDHAPSNKQDTIIVKEPPHMNKTDNNTEKSMAEEASGTSALLAAKKEEVIDKQLESTKAEMGEVREENERLKMSLNKIMSEYRMLQMQFHNIVNNKHEDNQETIMEEADLVSLSLGRVPVPRRSNEEDKKVSDSNKXKKEDEDDEELNEELALGLDCKFETSKSGSTTEATNXPNNSNKEEGGESTWPPPASKAREGGGGGGGGAAASASASVVEDEVSQQNNNPAAKKARVCVRARCDTPTMNDGCQWRKYGQKISKGNPCPRAYYRCTVAPSCPVRKQVQRCAEDMSILITTYEGNHNHPLPLTATAMASTTSAAASMLLSGSSTSHTMAPTNTATAAAAGNLHGLNLYLPDGSKSRQIYVSNPALSSTPSHPTITLDLTSSNPNLNNNNSSSPFVRFSSNYPNQPIRYPSSTSLSFSTSNDPNPLSWSNNGFLSSYNSTHHQPFNRSINMLSNNNLNFERQQQQQTMENFYQSFMQRNNSKNASSSSSSSSSSDPIAAATKAITADPSFQSALAAALSSFIGGGSGIGSTHHQGNNYNQVGGGGGDGENSNKMKFSELFPVSSTLASSSKVINNSNNGGCGSSFLNKTQPTKTTQNNGSFMFLPPSLPFSSXPKSASASPGDNGGDDHRSS* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4202 671 MobiDBLite consensus disorder prediction 11 66 - -
Amo01g4202 671 Gene3D WRKY domain 264 342 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo01g4202 671 MobiDBLite consensus disorder prediction 617 671 - -
Amo01g4202 671 ProSiteProfiles WRKY domain profile. 275 341 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo01g4202 671 MobiDBLite consensus disorder prediction 564 595 - -
Amo01g4202 671 MobiDBLite consensus disorder prediction 197 220 - -
Amo01g4202 671 MobiDBLite consensus disorder prediction 564 585 - -
Amo01g4202 671 Coils Coil 91 118 - -
Amo01g4202 671 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 61 663 IPR044810 GO:0003700
Amo01g4202 671 SUPERFAMILY WRKY DNA-binding domain 273 341 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo01g4202 671 MobiDBLite consensus disorder prediction 617 658 - -
Amo01g4202 671 SMART WRKY_cls 280 340 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo01g4202 671 MobiDBLite consensus disorder prediction 499 534 - -
Amo01g4202 671 MobiDBLite consensus disorder prediction 1 83 - -
Amo01g4202 671 MobiDBLite consensus disorder prediction 158 179 - -
Amo01g4202 671 MobiDBLite consensus disorder prediction 401 442 - -
Amo01g4202 671 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 61 663 - -
Amo01g4202 671 MobiDBLite consensus disorder prediction 153 260 - -
Amo01g4202 671 Pfam WRKY DNA -binding domain 281 339 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4202 Amo-Chr1 117582802 117588888 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g4202 84 567 WRKY Transcription Factor Family AT1G18860 39.777 6.09e-79 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo01g4202 WRKY 8.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4202 - - adu:107467779 1054.66