Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4198 ATGGAAGGTAAAATGCTTATATTGGTGTTGTTATGTGTGTTCCCTACCTTAAATGCTAATATAGCTGAATTCGACCAAGTATGGATGGAGCGATCTATAGAAGCCAAAAAAGCAGCTCGCAAGGCTTTCAAGCCAAACCCTGAGGCAGTCACTGATGAATTCAATCAACATGTCAACAAGGACCTTGAAGGTTCCAATAAAACGAGAAGGGGTTTATCCGGCAAATACAAAGGTCCATGTATGGCTACAAATCCCATTGACCGTTGCTGGAGATGTGACCCCAACTGGGAGAAAAACCGCCAACGGTTAGCAGACTGTGCTATTGGTTTCGGCCATGGCACGACGGGCGGCAAAGGTGGCAAAATCTACGTTGTCAATGATCCCTCAGATCATGATCTCCTCAACCCAAAACCTGGGACTCTGCGATTCGCAGTGATTCAGAAGGAGCCATTGTGGATCATTTTTAAACATGACATGACCATCAAGCTTAGTAGTGAGCTTATAGTCACTAGTCACAAGACCATAGATGCACGTGGTGCCAATGTTCACATTGCCAATGGTGCCCAAATGACMCTACAGTTTGTGAAGAACATAATCGTTCATGGACTGCATATTCACGGCATCAGGAAACATGCCGGCGGCATGATAAGAGACTCGGTCGACCACTTTGGAATCCGCACTGAGAGCGATGGGGATGGGCTTTCATTGTTTGGAGCTACSAACATTTGGATTGATCATGTTTCTCTGTCAAATTGTGATGATGGACTTATTGATGCCGTTGCTGGATCAACAGCTATTACCATATCCAACTGCCACATGACTCGCCATAATGATGTTATATTACTTGGTGCAAGTGATGCCTACTCAGGAGATCAAATCATGCAAGTAACATTGGCATTCAACCATTTTGGGCAAGGATTGGTGCAGAGGATGCCAAGGTGCAGATGGGGTTTCTTCCATATTGTCAACAATGACTACACTCACTGGCTTATGTATGCCGTCGGTGGTAGCCAACATCCCACCATCGTCAGCCAGGGCAACCGATTTATCGCACCTCCAAACCCAGCTGCAAAAGAGGTTACCAAGAGGGATTATGCTCCTCAAAGTGTGTGGAAAAATTGGAATTGGAGATCAGAGGGTGACTTAATGCTGAATGGAGCCTTCTTTGTTGAGTCTGGGACGAAGGTTACAAACTTTCCCAAATCAGGAGGTATTACTGCAAAGCCTGGGAGTTTCACATCAAGTCTCACTCGCTTTGCAGGTCCTCTCAAATGTGTAGTACACAAGCCATGCTGA 1296 0.4552 MEGKMLILVLLCVFPTLNANIAEFDQVWMERSIEAKKAARKAFKPNPEAVTDEFNQHVNKDLEGSNKTRRGLSGKYKGPCMATNPIDRCWRCDPNWEKNRQRLADCAIGFGHGTTGGKGGKIYVVNDPSDHDLLNPKPGTLRFAVIQKEPLWIIFKHDMTIKLSSELIVTSHKTIDARGANVHIANGAQMTLQFVKNIIVHGLHIHGIRKHAGGMIRDSVDHFGIRTESDGDGLSLFGATNIWIDHVSLSNCDDGLIDAVAGSTAITISNCHMTRHNDVILLGASDAYSGDQIMQVTLAFNHFGQGLVQRMPRCRWGFFHIVNNDYTHWLMYAVGGSQHPTIVSQGNRFIAPPNPAAKEVTKRDYAPQSVWKNWNWRSEGDLMLNGAFFVESGTKVTNFPKSGGITAKPGSFTSSLTRFAGPLKCVVHKPC* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4198 431 PANTHER PECTATE LYASE 6 431 - -
Amo01g4198 431 Pfam Pectate lyase, N terminus 20 72 IPR007524 GO:0030570
Amo01g4198 431 Gene3D - 83 424 IPR012334 -
Amo01g4198 431 PANTHER PECTATE LYASE 18-RELATED 6 431 IPR045032 GO:0030570
Amo01g4198 431 Pfam Pectate lyase 165 349 IPR002022 -
Amo01g4198 431 PRINTS Pollen allergen Amb family signature 106 123 IPR018082 -
Amo01g4198 431 PRINTS Pollen allergen Amb family signature 130 155 IPR018082 -
Amo01g4198 431 PRINTS Pollen allergen Amb family signature 166 182 IPR018082 -
Amo01g4198 431 PRINTS Pollen allergen Amb family signature 230 251 IPR018082 -
Amo01g4198 431 PRINTS Pollen allergen Amb family signature 310 329 IPR018082 -
Amo01g4198 431 PRINTS Pollen allergen Amb family signature 332 351 IPR018082 -
Amo01g4198 431 PRINTS Pollen allergen Amb family signature 374 398 IPR018082 -
Amo01g4198 431 SMART amb_all 158 355 IPR002022 -
Amo01g4198 431 SUPERFAMILY Pectin lyase-like 84 422 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4198 Amo-Chr1 117524332 117526655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g4198 5 431 Polysaccharide Lyase AT3G01270 54.936 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4198 K01728 - gmx:100801864 667.922