Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4193 ATGGCGGGTGGGAGGCTCTTCAGCTCTGCCTTCTCCAACACCAACAACAGTAACACTCTTCTTCTTCATCAGAACCAAGCTTCCCAGCCTCTTCCTCCTCCGTCTCTCTTCCTATCTTCATCACTTCCTTTTCTCGGTTCTCGATCCATGGTGAGCTTCGAAGATGTTCCAGGAGGGAAGGGGTGTAAAAATGGGTCGTTCTTCCGGACATACGACCCGGCGGAGGAGGACGGGGAGGAGAGCATGGAGGAGTACTTGACGCAGCCGGCGGAGAAGAAGCGGCGGCTATCGGCGGAGCAAGTTGAGTTCCTGGAGAAGAGCTTCAAGGAAGAGAACAAGCTGGAGCCAGAGAGGAAGACYAAYCTGGCMAAGGAACTTGGGCTGCAGCCGCGGCAGGTGGCGATATGGTTCCAGAACCGCCGCGCACGGTGGAAGACGAAGCAGCTGGAGAAGGATTATGATTCCCTTCAGGCTACCTTTGACACCCTTAAGGCCAACTACGATAACCTCCTCAAGGAGAAAGATCGCTTGAAAGCAGAGGTAGCAAGGCTGACGGAGAAGGTGGTTGCAAGGGAGAAAGAAGGCGAAGACAAGAGTGATGAAAGAAAGGGAATGCAGGAGGCAACCGCAGCAGCAGTTTCATCAGAAGGCGAAGGGTCCAAGATATCAGTGAAGAGTGATATGCTGGATTCGGATGACAATATAAATAGCCCCTACTACCACACAACCTCTGGAATGTTCGAGGCAGATCAATCGGATCTGTCACAGGACGAGGAAGAGAATCTCATAAATCGGAGCCTCTTGCATCCATACCTCATCTTCCCTAAACTTGAGCATGTTGAATACTCCGACCCGCCTGAGACTTCATGTAACTTTGGATTCGCTCATGAAGATCATGCTATTTGGTCCTGGTCTTATTGA 921 0.5136 MAGGRLFSSAFSNTNNSNTLLLHQNQASQPLPPPSLFLSSSLPFLGSRSMVSFEDVPGGKGCKNGSFFRTYDPAEEDGEESMEEYLTQPAEKKRRLSAEQVEFLEKSFKEENKLEPERKTNLAKELGLQPRQVAIWFQNRRARWKTKQLEKDYDSLQATFDTLKANYDNLLKEKDRLKAEVARLTEKVVAREKEGEDKSDERKGMQEATAAAVSSEGEGSKISVKSDMLDSDDNINSPYYHTTSGMFEADQSDLSQDEEENLINRSLLHPYLIFPKLEHVEYSDPPETSCNFGFAHEDHAIWSWSY* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4193 306 ProSitePatterns 'Homeobox' domain signature. 122 145 IPR017970 GO:0000981|GO:0006355
Amo01g4193 306 CDD homeodomain 92 148 IPR001356 GO:0003677
Amo01g4193 306 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 24 303 IPR045224 GO:0003700
Amo01g4193 306 Coils Coil 139 194 - -
Amo01g4193 306 PRINTS Lambda-repressor HTH signature 118 127 IPR000047 GO:0003677
Amo01g4193 306 PRINTS Lambda-repressor HTH signature 127 143 IPR000047 GO:0003677
Amo01g4193 306 MobiDBLite consensus disorder prediction 191 230 - -
Amo01g4193 306 SMART HOX_1 90 151 IPR001356 GO:0003677
Amo01g4193 306 Pfam Homeobox associated leucine zipper 147 188 IPR003106 GO:0006355|GO:0043565
Amo01g4193 306 MobiDBLite consensus disorder prediction 191 205 - -
Amo01g4193 306 SUPERFAMILY Homeodomain-like 82 149 IPR009057 -
Amo01g4193 306 ProSiteProfiles 'Homeobox' domain profile. 87 147 IPR001356 GO:0003677
Amo01g4193 306 Gene3D - 142 193 - -
Amo01g4193 306 Gene3D - 95 141 - -
Amo01g4193 306 Pfam Homeodomain 92 145 IPR001356 GO:0003677
Amo01g4193 306 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-54 24 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4193 Amo-Chr1 117464864 117467298 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g4193 36 232 Homeobox Transcription Factor Family AT3G01470 46.829 4.32e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo01g4193 Homeodomain 6.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4193 - - gmx:732618 326.635