Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4184 ATGTGGAATCCTCTTTCTTGGGTTATGGAGGCTGCTGCTATAATGGCAATTGCTCTTGCCAATGGAGGGGGTAAGCCTCCTGATTGGCAAGACTTTGTTGGTATTATCACTTTGCTTGTCATCAATTCAACCATCAGTTTCATAGAGGAGAACAATGCTGGTAATGCTGCTGCAGCTCTCATGGCTCGTCTCGCTCCGAAAGCAAAGGTTCTTCGTGATGGTAGGTGGAACGAACAAGATGCCGCAGTCCTGGTTCCTGGTGACATCATCAGCATCAAACTTGGAGATATTATCCCTGCAGATGCTCGCCTTCTCGAAGGTGATCCTTTGAAAATTGATCAGTCTGCACTTACCGGTGAGTCCCTACCAGTGACAAAGGGTCCCGGTGATGGTGTGTATTCTGGTTCAACCTGCAAACAAGGAGAGATTGAAGCTGTGGTCATCGCTACCGGTGTTCACACCTTCTTTGGGAAAGCTGCTCACCTTGTAGATACTACTAATCAAGTCGGTCACTTTCAACAGGTCTTGACTGCAATTGGTAACTTCTGCATATGTTCTATTGCTGTGGGGATGATCATTGAGATCATTGTTATGTATCCCATTCAAGATAGAAAATATCGTCCGGGAATAGATAACCTGCTTGTGCTTCTTATTGGAGGAATTCCAATTGCCATGCCGACGGTTTTGTCCGTGACCATGGCTATTGGTTCTCATAGGCTCTCTCAGCAGGGTGCTATCACAAAGAGGATGACAGCCATTGAAGAAATGGCAGGCATGGATGTTCTTTGTAGTGACAAGACTGGGACTTTAACACTAAATAAGCTTACAGTCGACAAAAATCTTGTCGAGGTTTTCGCAAAAGGAGTGGACCCGGATACTGTTGTTTTGATGGCAGCTCGAGCTTCAAGACTTGAGAATCAAGACGCCATAGATACTGCCATTGTTGGGATGCTGGCTGATCCAAAGGAGGCACGTGCCGGTATACAAGAAGTGCATTTTCTTCCTTTCAATCCAACTGATAAGAGGACTGCATTGACCTATATTGATCAAGATGGCAAAATGCATAGAGTAAGCAAAGGTGCACCCGAACAGATCCTACACCTTGCCCACAACAAATCAGACATCGAACGCAGAGTTCATGCAGTGATTGATAAGTTCGCAGAGCGCGGTCTGCGATCTCTTGCTGTAGCATACCAGGAAGTTCCCGATGGAAGGAAAGAAAGTGCTGGAGGCCCATGGCAGTTTATTGGCCTTATGCCTCTCTTTGACCCACCTAGGCATGATAGTGCCGAAACAATACGGAGGGCACTAAATCTCGGAGTAAATGTCAAAATGATTACAGGTGATCAACTAGCTATAGGAAAGGAAACAGGACGACGCTTGGGAATGGGTACCAATATGTACCCTTCATCTGCTTTACTTGGACAGGACAAGGATGAATCCATTGCTGCCTTGCCCATTGATGAACTAATCGAAAAAGCCGATGGATTTGCTGGTGTATTTCCTGAGCACAAGTACGAGATTGTGAAGCGTTTGCAAGCGAGGAAACATATCTGTGGAATGACTGGTGATGGAGTGAATGATGCACCTGCTCTAAAGAAGGCAGACATTGGTATAGCTGTCGCCGACGCCACGGATGCTGCTCGTAGTGCATCTGATATTGTTTTAACAGAACCTGGTCTTAGTGTTATCATAAGTGCTGTTTTGACCAGCCGAGCTATTTTCCAGAGAATGAAAAATTATACAATTTATGCTGTCTCAATCACAATTCGTATCGTGCTCGGTTTCATGTTGCTGGCTCTCATATGGAAGTTTGATTTTCCACCTTTTATGGTTCTTATTATTGCTATCCTGAATGATGGTACTATTATGACAATTTCAAAGGATAGAGTAAAACCGTCACCACTGCCGGATAGCTGGAAGCTAGCAGAGATATTTACTACTGGCATTGTGCTCGGAAGTTACTTGGCAATGATGACTGTCATTTTCTTTTGGGCTGCATACAAGACAAATTTCTTCCCGCGAGTGTTTGGTGTTTCAACCCTTGAAAAAAGTGCTCATGATGATTTCCGAAAACTCGCCTCAGCAATTTATCTTCAAGTGAGCACCATTAGTCAAGCTCTTATATTCGTGACTCGTTCTCGAGGCTGGTCATATGTCGAGCGTCCGGGTTTATTGCTGGTGGTTGCTTTCGTAGTTGCTCAGCTGATCGCCACGTTGATCGCAGTATATGCAAACTGGAGCTTTGCCGCGATCGAAGGAATAGGATGGGGTTGGGCTGGTGTAATATGGCTGTATAACATAATATTCTACATCCCTCTTGATATCATCAAATTCTTGATTCGCTATGCTTTGAGTGGAAGGGCTTGGGATCTTGTCATTGAGCAAAGGATTGCATTCACTAGGCAAAAGGACTTTGGGAAAGAACAAAGGGAACTTCAATGGGCACATGCTCAAAGAACACTGCATGGATTGCAAGCCCCTGACACTAAGATGTTCACTGAGCGCACGCATTTCAATGAGCTCAATCAAATGGCCGAAGAAGCTAAGAGGAGAGCCGAAATTGCGAGGTTGAGAGAGCTCCACACACTGAAAGGTCATGTGGAATCAGTTGTGAGATTGAAGGGTCTGGACATAGACACAATTCAGCAAGCATACACAGTCTGA 2667 0.4499 MWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLVINSTISFIEENNAGNAAAALMARLAPKAKVLRDGRWNEQDAAVLVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQQVLTAIGNFCICSIAVGMIIEIIVMYPIQDRKYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVFAKGVDPDTVVLMAARASRLENQDAIDTAIVGMLADPKEARAGIQEVHFLPFNPTDKRTALTYIDQDGKMHRVSKGAPEQILHLAHNKSDIERRVHAVIDKFAERGLRSLAVAYQEVPDGRKESAGGPWQFIGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDESIAALPIDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAMMTVIFFWAAYKTNFFPRVFGVSTLEKSAHDDFRKLASAIYLQVSTISQALIFVTRSRGWSYVERPGLLLVVAFVVAQLIATLIAVYANWSFAAIEGIGWGWAGVIWLYNIIFYIPLDIIKFLIRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQAPDTKMFTERTHFNELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIDTIQQAYTV* 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4184 888 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 1 744 IPR006534 GO:0008553|GO:0016021|GO:0120029
Amo01g4184 888 Gene3D - 837 888 - -
Amo01g4184 888 Pfam E1-E2 ATPase 64 242 - -
Amo01g4184 888 SFLD p-type atpase 245 573 IPR044492 -
Amo01g4184 888 Pfam haloacid dehalogenase-like hydrolase 259 536 - -
Amo01g4184 888 SUPERFAMILY Calcium ATPase, transmembrane domain M 1 785 IPR023298 -
Amo01g4184 888 Gene3D - 275 422 IPR023299 GO:0000166
Amo01g4184 888 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 35 298 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo01g4184 888 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 497 610 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo01g4184 888 SUPERFAMILY Calcium ATPase, transduction domain A 66 163 IPR008250 -
Amo01g4184 888 Coils Coil 839 859 - -
Amo01g4184 888 Gene3D - 28 753 - -
Amo01g4184 888 PANTHER CALCIUM-TRANSPORTING ATPASE 1 868 - -
Amo01g4184 888 ProSitePatterns E1-E2 ATPases phosphorylation site. 265 271 IPR018303 -
Amo01g4184 888 PRINTS H+-transporting ATPase (proton pump) signature 379 397 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo01g4184 888 PRINTS H+-transporting ATPase (proton pump) signature 494 510 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo01g4184 888 PRINTS H+-transporting ATPase (proton pump) signature 522 538 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo01g4184 888 PRINTS H+-transporting ATPase (proton pump) signature 553 578 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo01g4184 888 PRINTS H+-transporting ATPase (proton pump) signature 698 719 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo01g4184 888 CDD P-type_ATPase_H 1 779 IPR006534 GO:0008553|GO:0016021|GO:0120029
Amo01g4184 888 SUPERFAMILY HAD-like 259 569 IPR036412 -
Amo01g4184 888 Gene3D - 260 559 IPR023214 -
Amo01g4184 888 SFLD C1.7: P-type atpase like 245 573 - -
Amo01g4184 888 Gene3D - 66 150 - -
Amo01g4184 888 PRINTS P-type cation-transporting ATPase superfamily signature 545 557 - -
Amo01g4184 888 PRINTS P-type cation-transporting ATPase superfamily signature 113 127 - -
Amo01g4184 888 PRINTS P-type cation-transporting ATPase superfamily signature 263 277 - -
Amo01g4184 888 PRINTS P-type cation-transporting ATPase superfamily signature 439 449 - -
Amo01g4184 888 PRINTS P-type cation-transporting ATPase superfamily signature 522 541 - -
Amo01g4184 888 PRINTS P-type cation-transporting ATPase superfamily signature 417 428 - -
Amo01g4184 888 PANTHER PLASMA MEMBRANE ATPASE 1 1 868 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4184 Amo-Chr1 117253941 117260170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g4184 1 888 Primary Pumps ATPases AT5G62670 94.707 0.0 1693
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4184 K01535 - cpap:110819640 1650.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g4184 01 117253941 117260170 Amo11g2147 11 117845037 117851301 hybridization