Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4176 ATGGGACACAAGAAGCGAAATTCGGCTCCGCGGTCCAAACATTCGCCGGCGACTTCTCCGGCGGCGCAATTCGCCGTCGTCGGCGACGGTACCGCATCGCCGGAGAAACAAGACTCAGGCAATGTTCCCGATCACAACAGCAAKACCAATAACGGCGTTCAGAACCCTAACGGGATCGAGTTTCCTCCTCCGCCACCGCCGCCGCCTCCTCCGCCTCAATCCGATGGTCCTTCCTCCGATTACACCGCGATCAAGCTCGAGTGTGAGCGTGCCCTAACGGCGTTCCGGCGCGGGAACCACAACAGAGCACTGAAGCTCATGAAGGAGCTATGCGGGAAYCAAGAGAACGCTGCTCACTCCGCATTRGCGCACCGCGTCCAGGGATTCGTCGCCTTTAAGGTCGCRGGAATCTTGAACGACCCTACCGCGAAGCAACGGCACGTGAAGAACGCCGTCGATTCGGCTCGCAAGGCCGTCGAGCTGTGCCCTAATTCGGTCGAGTACGCGCACTTCTACGCCAATTTGATGCTCGAGGTCGCGAACGACGGGAAGGATTATGAGGAGGTAGTYCAGGAGTGCGAGAGGGCGCTGGCGATAGAGAACCCTAGCGATCCAGGGAAGGAGAGCTTCCAGGATGAGAGTGATCAGAAGTTGTCGACTCCCGAGGCACGTGTTTCGCATGTGCAAAACGAGCTGCGGCAGCTGATTCAGAAGTCGAACATCGCTTCGCTGTCGAGCTGGGTGAAGAATCTGAGCAACGGCGAGGAGAGATTTCGGCTGATTCCGATTKGGAGGCCGACGGAGGACCCTATGGAGCTGAGACTGGTTCAGACTCGAAGGCCTAACGAGATCAAGAAAGTGACGAAGACGCCGGAAGAGAGGAGGAAGGAGATTGAAGTGAGAGTCGCCGCTGCGAGGCTGTTGCAGCAGAAGTCTGAGTCGCCCCAATCTCCGAACGAAGTAGATAAGGATGAGAGGGGGMTGGATTCATCRTCAGCGYCTGGTCAGAGTAGGAGGAGGCATGMGAATTCGAAGAAGAATGGGTCTACTGCMGAGAGGAGGAAATGGGTGCAATCTTACTGGAGTTCGATGAGTGTGGAAATGAAGAAGGACWTGCTTAGGGTTAGGGTTTCTGATCTTAGGTCACACTTTGGGTCTTCGAAGGATACTTTGCCTATRGATCTTTTGGCGGAGGCTGTGTCGTATGCTGAGGCCAATAAGACATGGAAATTCTGGGTTTGCTGCCATTGTGATGAGAAATTTAACGATGACGAGTCTCACAGCCAACATCTTGCGCAGGCGCACATGGGTATGCTCTCGCCGAATTTGCAGGGGCATCTGCCCCATAATGTTGACAGTGAGTGGATTGATATGATTCATAATTGTTCTTGGAAGCCMCTGGATGTTTCTGCTGCAGTTAAAATGCTTGAGAGTAGAATGAAATTCAAAGGTTCAWCATTAGTTGAGGATTCGTACTTCGATCATCATACACAGGACTACTATGACTGTATTAACGATGCAACTGATCCTTACCATGAGAAAGAAGGTTTGGYATACAGTCTTCATAACTGTACAACAGAAAGCAATAACTATTGTAAAGCTGTTGCAAGTAATGTGAGAGAAGGCGTTGAAAACCAATTATCTATGTCYCATCCTTTCGCTGATAGTTGGCCAGTATCTGATGATTCTGAGCGCGCAAAACTTCTGGAGAAAATTCATGCAGTATTTGAGATGCTTATTAAGCATAAATATCTTGCTGCTAGTCACCTTAGCAAGGTTATACAATTTACTATGGGTGAGATTCAGGGTCTTGCTGCTGGTTCTCAATTTCTAAARCATGGTGTCGARCAAACGCCAATGTGCATATGCTTTCTGGGGGCWTCACAGCTTAAGAAAATTCTCCAATTTCTTCAAGAGCTATCTCATGCATGCGGATTGGGTAGATATGGTGATAAAGGTAATGGTCTCATGAATGAGTTTCATGATATCAATCAAGGTCCTGAGATCAAAGAGAATATTGTTCTCAATYGAGATGCATCATGCCTCCTTCTGGATGAGTGTTTACTGGTMACACAAGTCACWTTTGATGCTGCTCAGGGGACTGTATTGGATAATATGACTGCCCAAAGTTCTCATGATGGTATTTCAAGCGATAATGATGATTTTCTATCCTGGATATATTCAGGTTCAGCTATKGGGGATCAATTGACATCATGGATGCGAACCAAAGAAGATAATAAACACCAAGGWACAGAAATTATCAAGATGCTTGATAAGGAGTTTTATCAACTACAGACCCTATGTGAGAAGAAGTCTGACCGAATGAGTTATGAYGAAGCACTGCAGACAGTAGAGGATCTTTGTCTTGAAGAGGGAAAGAAGAGGGAAATTGTTGGTGACTTTGTCCAGCAAAGCTATGAGTCTGTCTTAAGAAAACGAAGAGAAGAGCTCATTGAAAGTGAGAATGATGTGATGAATGTCGGCAATAGGTTTGAGTTGGATGCCATATCAAATGTTTTGCAAGAAGCAGAATCAATGAATGTTAATCAATTTGGATATGAAGAAACTTATGCTGGTGTYACTGCTCAGTTATGTGACTTGGAATCTGGTGAAGAAGAAGAATGGAGAATGAAAGACTACTTGCATCAAATGGATGGTTGTATAGAAATTGCTATTCAGAAACTGAAAGAGCACTTGTCTATAGAGCTTAGCAAAATTGATGCTCGAATCATTAGAAATATTGCTGAGATGCAACAATTGGAACTCAAGCTTGGGCCTCTTTCCGCTTATGATTATCGGGCTATATTATTGCCTCTAGTGAAGTCATACCTAAGGGCACGTTTAGAAGAATTTGCRGAGAAGGATGCAGTAGAGAAGTCTGATGCTGCYAGGGAAGCATTCTTGGCTGAACTTGCACGTGATGCTAAGAAGGCTAAAGGGGGAAGTGAGAACACAAGAAATGTGGATAAGACCAAAGATAAGAAGAAGACTAAAGATCACAGAAAAACAAAAGATCTGAAGGCTTCAAGTGGTCATGAGGAGCTATRGCTGCAAGCTAGCAGTCCTGATTCCAATACTGTTGCACCTGATAGTTACTTTCAAGATCCTGAGCTTGTTTCCATGAATGATAATTACTTGGAACAACAGGAAGAGGAATATAGACGGAAAATAGAGCTAGAAGAGGAGGAAAAAAAGCTTGAGGAAACTTTAGAATTTCAGCGTAGGATAGAAAATGAAGCCAAACAAAAACACCTTGCTGAATTACAAAAGAAATCATCCGGGATATGTTTAGAGGAAGTTGCGGACAAAATTCAGGATGCTCAGTTGAAGACAGTTGCTGATGGGKCAGATGTGCATGATCATGTAAAACTGCCTATACAGGAGCAGTCAGCTGATGAGAATTGCTGTCCTAGTGATGTGGATAGTGTGATAGTAACCACTAAAAATGGTTCTTTGGTGCCAAATAAATATTCAGTTGATTCAGCTGATCAAAAGATATTGCATCAGCCAACTGTTAAACAAGGTATACCTAATGGAGTTGTTCCAGAGAATGGTCATCAGTTGCCTGATCGTCGTSCAGGGAAAAAGCATAAACGGCATAGGAATTCTTCCAAAATGGTTGATGGAAAATTGGAATCTGTCTCATTGGAAAAGAATATTGAGGATGCACATACTGACAGACATTCAAGAGAGCATGTTAAATTCCATAATGATCAAGATGCAAACAATGGGTGGGAAAGCAATGTATCAAAGGCGAAGAAAGATCTMCAAATGGAAGATGAGGAGGAGGAAAGATTCCAAGCTGATCTTAAAAAYGCTGTACGACAAAGCCTGGACACATATCAAGCACGTGGAAAACTGCCTTTGGATTCTAGTTTAAGAATGTCTCAGAGATCTGCTTCACAAGTAGATTCATTGGGTTTTCCAACAGAGAAAGACTCAACTGAGGATGCAAATGGAACTACATTGCTTGGTACTGGGCTAAAGAATGAAGTTGGTGAATATAACTGTTTTCTCAATGTTATTATACAGTCTTTATGGCATTTAAGARGCTTTCGGGAGGAATTTCTTGGCAGATCAAGATCAGAGCATGATCARGTTGGCAATCCTTGTGTRGTCTGTGCATTGTATGAGATCTTCACTGCTTTGGACCTTGCATCAAAGGACTCAAGGAGAGAAGCAGTAGCACCTACTTCCCTGCGAATAGCTCTAAGCAACCTATATCCAGATAGTAACTTCTTCCAGGAGGCTCAGATGAACGATGCTTCTGAGGTACTTGCAGTGATATTTGACTGCCTTCATCGTMCATTTACCCGTGGTTCAAGTGTTTCTGACACRGAGTCYGTGGAAAGTAATTGCATGGGATCTTGGGATTGTGCAAATAATACTTGTATAGCACATTCACTTTTCGGAATGGACATTTTTGAGCAAATGAACTGCTATCACTGTGGTCTCGAGTCCAGACATTTGAAGTATACATCCTTCTTTCACAATATAAATGCCAACGCATTACGAACAATGAAGGTTATGTGTTCTGAAAGTTCCTTTGATGAGCTATTGAACCTTGTGGAGATGAACCATCAATTGGCTTGTGATCCAGAAGTTGGTGGTTGTGGCAAGCTTAACTACATCCATCACTTTCTTTCAACTCCACCTCATGTTTTTATGACAGTTCTTGGTTGGCAAAATACATGCGAGAGTGCTGATGATATAACAGCCACTGTGGCAGCCCTGAGCACTGCACTAGACATCAGTGTCCTATATCGAGGCTTAGATCCTAAAAGAACRCATAGCTTGGTATCAGTGGTTTGCTACTATGGCCAACATTATCATTGCTTTGCTTACAGTCATGACCATGATCAATGGATTATGTATGATGACAAGACTGTCAAGATAATTGGTGGATGGGCAGATGTTCTTACAATGTGTGAAAAAGGGCATCTACAACCTCAGGTTCTTTTCTTTGAAGCTGTAAACTAG 4980 0.4373 MGHKKRNSAPRSKHSPATSPAAQFAVVGDGTASPEKQDSGNVPDHNSXTNNGVQNPNGIEFPPPPPPPPPPPQSDGPSSDYTAIKLECERALTAFRRGNHNRALKLMKELCGNQENAAHSALAHRVQGFVAFKVAGILNDPTAKQRHVKNAVDSARKAVELCPNSVEYAHFYANLMLEVANDGKDYEEVVQECERALAIENPSDPGKESFQDESDQKLSTPEARVSHVQNELRQLIQKSNIASLSSWVKNLSNGEERFRLIPIXRPTEDPMELRLVQTRRPNEIKKVTKTPEERRKEIEVRVAAARLLQQKSESPQSPNEVDKDERGXDSSSAXGQSRRRHXNSKKNGSTAERRKWVQSYWSSMSVEMKKDXLRVRVSDLRSHFGSSKDTLPXDLLAEAVSYAEANKTWKFWVCCHCDEKFNDDESHSQHLAQAHMGMLSPNLQGHLPHNVDSEWIDMIHNCSWKPLDVSAAVKMLESRMKFKGSXLVEDSYFDHHTQDYYDCINDATDPYHEKEGLXYSLHNCTTESNNYCKAVASNVREGVENQLSMSHPFADSWPVSDDSERAKLLEKIHAVFEMLIKHKYLAASHLSKVIQFTMGEIQGLAAGSQFLKHGVEQTPMCICFLGASQLKKILQFLQELSHACGLGRYGDKGNGLMNEFHDINQGPEIKENIVLNXDASCLLLDECLLVTQVTFDAAQGTVLDNMTAQSSHDGISSDNDDFLSWIYSGSAXGDQLTSWMRTKEDNKHQGTEIIKMLDKEFYQLQTLCEKKSDRMSYDEALQTVEDLCLEEGKKREIVGDFVQQSYESVLRKRREELIESENDVMNVGNRFELDAISNVLQEAESMNVNQFGYEETYAGVTAQLCDLESGEEEEWRMKDYLHQMDGCIEIAIQKLKEHLSIELSKIDARIIRNIAEMQQLELKLGPLSAYDYRAILLPLVKSYLRARLEEFAEKDAVEKSDAAREAFLAELARDAKKAKGGSENTRNVDKTKDKKKTKDHRKTKDLKASSGHEELXLQASSPDSNTVAPDSYFQDPELVSMNDNYLEQQEEEYRRKIELEEEEKKLEETLEFQRRIENEAKQKHLAELQKKSSGICLEEVADKIQDAQLKTVADGXDVHDHVKLPIQEQSADENCCPSDVDSVIVTTKNGSLVPNKYSVDSADQKILHQPTVKQGIPNGVVPENGHQLPDRRXGKKHKRHRNSSKMVDGKLESVSLEKNIEDAHTDRHSREHVKFHNDQDANNGWESNVSKAKKDLQMEDEEEERFQADLKNAVRQSLDTYQARGKLPLDSSLRMSQRSASQVDSLGFPTEKDSTEDANGTTLLGTGLKNEVGEYNCFLNVIIQSLWHLRXFREEFLGRSRSEHDQVGNPCVVCALYEIFTALDLASKDSRREAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRXFTRGSSVSDTESVESNCMGSWDCANNTCIAHSLFGMDIFEQMNCYHCGLESRHLKYTSFFHNINANALRTMKVMCSESSFDELLNLVEMNHQLACDPEVGGCGKLNYIHHFLSTPPHVFMTVLGWQNTCESADDITATVAALSTALDISVLYRGLDPKRTHSLVSVVCYYGQHYHCFAYSHDHDQWIMYDDKTVKIIGGWADVLTMCEKGHLQPQVLFFEAVN* 1660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4176 1659 Gene3D Cysteine proteinases 1307 1657 - -
Amo01g4176 1659 Coils Coil 1256 1276 - -
Amo01g4176 1659 MobiDBLite consensus disorder prediction 978 994 - -
Amo01g4176 1659 MobiDBLite consensus disorder prediction 1 82 - -
Amo01g4176 1659 MobiDBLite consensus disorder prediction 288 302 - -
Amo01g4176 1659 MobiDBLite consensus disorder prediction 1290 1319 - -
Amo01g4176 1659 Pfam Protein of unknown function (DUF627) 90 201 IPR006866 -
Amo01g4176 1659 Coils Coil 1042 1083 - -
Amo01g4176 1659 MobiDBLite consensus disorder prediction 288 351 - -
Amo01g4176 1659 ProSitePatterns Zinc finger C2H2 type domain signature. 414 435 IPR013087 -
Amo01g4176 1659 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1326 1658 IPR028889 -
Amo01g4176 1659 MobiDBLite consensus disorder prediction 1174 1205 - -
Amo01g4176 1659 MobiDBLite consensus disorder prediction 206 220 - -
Amo01g4176 1659 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1659 - -
Amo01g4176 1659 MobiDBLite consensus disorder prediction 34 57 - -
Amo01g4176 1659 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 1 1659 - -
Amo01g4176 1659 Gene3D Tetratricopeptide repeat domain 80 212 IPR011990 GO:0005515
Amo01g4176 1659 MobiDBLite consensus disorder prediction 58 76 - -
Amo01g4176 1659 CDD Peptidase_C19 1417 1656 - -
Amo01g4176 1659 MobiDBLite consensus disorder prediction 1014 1032 - -
Amo01g4176 1659 Pfam Ubiquitin carboxyl-terminal hydrolase 1327 1634 IPR001394 GO:0004843|GO:0016579
Amo01g4176 1659 MobiDBLite consensus disorder prediction 200 221 - -
Amo01g4176 1659 MobiDBLite consensus disorder prediction 1292 1319 - -
Amo01g4176 1659 Pfam Protein of unknown function (DUF629) 357 889 IPR006865 -
Amo01g4176 1659 SUPERFAMILY Cysteine proteinases 1326 1656 IPR038765 -
Amo01g4176 1659 MobiDBLite consensus disorder prediction 978 1032 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4176 Amo-Chr1 117085006 117094896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g4176 80 1656 C2H2 Transcription Factor Family AT3G47890 56.113 0.0 1682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4176 - - adu:107493676 3207.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g4176 01 117085006 117094896 Amo11g2127 11 116794115 116804285 hybridization