Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4174 ATGGACGGCGGCGATCATTCTTCTTCCCTCTCCGATAACGATGAGGACGAGAACGAACTACCGGACATTCTCTCCCGAGTTCGACTCGTCGACGCTCCCGTGCTCTTGTTTGTTTGTTTCCACCACGCTCTTCGCTCTGAACTCAGCCAGCTCCGCCGCTTGGCAGAAACGGCGTCGTTCGATGATCGGTCTCAGGAACCGAGAGGAGAAGTTATTCTCAAGCTTCAACGGCGGTTCCGGTTTCTTAAACTTGCTTTCAAGTATCACTGTGCTGCGGAAGACGAGGTTATCTTTATTGCGTTGGATAGACACGTGAAAAATGTGGTATCTACATATTCCCTTGAACATAAAAGCACCAATGACCTCTACGATTCCATTATTCACTTATTGGATGAGCCGATGCCCCTGCATAAGAATATTTCCAAGCTGTTCCAAGAACTTGTGTACTGCATCGGCATCTTGCAAACTTCCATCTACCAACATATGCTGAAAGAAGAAGAGCAGGTTTTTCCACTGGTGATACAAAAATTACCTACCGAAGAACAGGCTTCGCTTGTGTGGCAATTCATATGTAGTGTTCCTATAATATTGCTGGAGGAACTTTTGCCATGGATGGTATCCTTCCTTTCCGAAGAGAAACAAGCAGAAGTCACTCAGTGTATAAATGAAATTGCACCAATGGAAAAAACACTCCAAGAGGTTTTGGTTTCTTGGATTGGAAGCAACCAACAAAGCTTCACTGAAGTCTCTTTTAAGGATGAAGTTCAAGGTGGTGCTCAATCCTTAGATATTGCAAGATCATTTCCGTTGGGTTCTTGCAATAGGAACTTCAAAGAACTTTCAAGTCAGATGGAAGTGAATGGCCCAAAAGACAAAGATGGGACAACCCAGGTTAATGTTCTTCATCTTTGGCATGATGCCATCATAAAGGATTTGGAAGAAATTCTGAAAGAACTTTGTTTAATAAAAAACTGCAGCTGCTTTCAGAATTTAGAATCACTGCTTATCCAATTGAAATTCTTTGCTGATGTCCTCACCTTCTACAGCAATGCTCAGAAAAGATTAGTATTGAAGAAACTTGCTGGTGACTGGTTGTCAAAGTCTACGGAAAACTTTTGTGATGTAAGTCACATTGAAGATTTACAGCAGTTGTTATTCTATAGATCGGAAAGTGGAATGCCTTTGTGCGAATTCGTAGGGAACCTTTGTCAAAAACTTGAATCATTCGTATCAAGGCTCAGAAAACAATTCGCCTTTCAAGAAAATGAGGTATTTCCTGTCATTAGAAAGAATTGCAGCAATGGGATGCAAGAGGGACTTCTGAGCTTGAGCCTGTATATGATGCCACTTGGGTTAGTAAAGGGTGCTATAACTTGGTTTTCAGTTCACCTGCCTGAAAAAGAATCCAGGTCCATTCTCTATTTCAAAAAGAAAGGAAATGATGTTGCCTGTAAAGGTTTTGCATCGCTCTTACAAGAGTGGTTCCGCATTGGGTATTCAGGTAAAACTTCTATTGAAAAATTCCGACAGGACTTGCACCATATGTTCAAAAGCAAATACTCTTTCTTACCTGAGCAAATCAAGAAAGCGCCTGGGTTTTCTTTAAATTCTGACTGCCTGCCTCATAAGGTCTCTAGCAAGATGTGTCTGTCCTATCCCTCACCTTCGGGATCCAACAAGTACGACACACCATACTCCACAGGAATTAATCTGCATATACTTTTTCCGGCCACAGTTGTTAAGTTGCATCAGAAGCTGGGATGCCATGCGGCAAATAGTTCTTCTGTTTCCTTTCTTGAAGATCCAAAACCAATTGACATAATWTTTTTCTTTCACAAGGCTATCAAGAAAGATTTGGACTACCTAGTTCTTGGCTCAGCTCAGTTAGAAGACAATGCTGAGTTGCTTATGGATTTCCACAAGCGATTCCACATCATATATTTTCTTTATCAAATCCATAGTGATGCAGAGGATGAAATAGTTTTCCCAGCTTTGGAGGCAAGTGGTAGGCTAAAAAACATTAGCCATGCCTACGCTTTCGATCACAATGTTGAAGTTAAACACTTCAATAAAATATCCCACATCCTTCATAAGATGTCTGAATTAGATATTTTGGTTTCTACATCCTTGGTAAGGTATCAGCATTTATGTAGGAAGCTGCAACAAATCTGCAAATCAATGCATAAATCACTTTCAGGCCATATTGACCGGGAGGAAGCAGAAATTTGGCCTCTAAGTAGAGAATTCTTCTCAAATAAGGAGCAAGGGAAGATCATAGGATGCATGCTTGGAAGAATAGGAGCACAGATATTGCAAGATATGATACCTTGGCTAATGGCATCGTTAACACAGAAAGAACAGCATGTTTTAATGTTCTTATGGTCCATGGCTACTAAAAATACAATGTTCAACGAGTGGRTAAGTGAATGGTGGGATGGGTACAGTATAACTAAGCCAGAAGAGGGAACAAAGCATGCACTTAAAGAGACTGTTGAGCCACTGGAGATWATATCTAAATACTTTTCTGAAGAAGTTCTTGATGAATTACAAGAAGAACCCTCATCCAACACAAATACTGATTTTCATCAGAAGGATCATATTGGTGATAATGTCCAGCTGTCTAACAACAAATTTGATSGCACKGTTAAGGTTCAAGCTGCAGCACAGAATAAAAATGAAATTTCAAAATCCACAAATCGTTTTCATGATAACAACAAACATGGTTGGAATCAAGAAAAGGAAGGAATCACAAATCCAATCAAAATTGAAGATCAATCATTTCAATTTCGTCACAATTCCAGGCATTATGACCGGCTTCTGAAACTGAGTCAAGATGATCTGGAGAAAGCAATAAGAAGGGTAACTCGCGATTCCTCCTTAGATCCTCAAGAAAAGTCATACATAATACAGAACCTGCTAATAAGCCGTTGGATTATTAGACAGAAGATATCCTTTACAGAAGTTGATGTCAAAAATGATGAGCAGGAATTTCCTGGGAAGCATCCATCCTATAGGGATCCTCTCAAACTAATTTATGGTTGCAAACATTACAAGAGAAACTGTAAGATTTTTTGCCCCTGTTGCAACCAACTTCATACTTGCATACATTGCCATAATGAGGTATCGGACCATATAATTGACAGGAAATCTATTACAAAAATGATGTGCATGGAGTGCTTAAACATTCAGCCCATTAATGCCACATGCTCAACTTCTTCCTGCAAGTTAACCATGGCAAAATATTACTGCTGGATCTGCAGATTATTTGAGGATGAAAAGGAAATTTACCACTGTCCCTATTGTAACCTGTGCCGAGTTGGGAAGGGCTTGGGTACCACGTACTTTCATTGCATGAGTTGCAATGCATGTATGTCGCGTAGTCTTTTGGTACACACATGCCGGGAAAAACATTTAGAGGACAACTGTCCAATTTGTCATGAATATATCTTCACATCCCTGGCTCCGGTAAAAGCCCTTCCATGTGGTCATGTGATGCACTCAGCATGCTTTCAGGAATATACCGGCTTTAACTATACCTGCCCCATATGTAGCAAGTCAATTGTAGACATGCAGGACTATTTTAAGAAGTTAGATTCTTTATTGGCCGAAGAGAAAATGTCTGATGAGCTTTCCAGTCGAACTCAGGTTATATTATGTAATGACTGCGAAAAGAAAGGAGTAGCTCCCTTCCACTGGCGTTACCACAAATGCCCTTATTGTGGTTCCTACAACACCAGAGTTCTATGA 3747 0.403 MDGGDHSSSLSDNDEDENELPDILSRVRLVDAPVLLFVCFHHALRSELSQLRRLAETASFDDRSQEPRGEVILKLQRRFRFLKLAFKYHCAAEDEVIFIALDRHVKNVVSTYSLEHKSTNDLYDSIIHLLDEPMPLHKNISKLFQELVYCIGILQTSIYQHMLKEEEQVFPLVIQKLPTEEQASLVWQFICSVPIILLEELLPWMVSFLSEEKQAEVTQCINEIAPMEKTLQEVLVSWIGSNQQSFTEVSFKDEVQGGAQSLDIARSFPLGSCNRNFKELSSQMEVNGPKDKDGTTQVNVLHLWHDAIIKDLEEILKELCLIKNCSCFQNLESLLIQLKFFADVLTFYSNAQKRLVLKKLAGDWLSKSTENFCDVSHIEDLQQLLFYRSESGMPLCEFVGNLCQKLESFVSRLRKQFAFQENEVFPVIRKNCSNGMQEGLLSLSLYMMPLGLVKGAITWFSVHLPEKESRSILYFKKKGNDVACKGFASLLQEWFRIGYSGKTSIEKFRQDLHHMFKSKYSFLPEQIKKAPGFSLNSDCLPHKVSSKMCLSYPSPSGSNKYDTPYSTGINLHILFPATVVKLHQKLGCHAANSSSVSFLEDPKPIDIIFFFHKAIKKDLDYLVLGSAQLEDNAELLMDFHKRFHIIYFLYQIHSDAEDEIVFPALEASGRLKNISHAYAFDHNVEVKHFNKISHILHKMSELDILVSTSLVRYQHLCRKLQQICKSMHKSLSGHIDREEAEIWPLSREFFSNKEQGKIIGCMLGRIGAQILQDMIPWLMASLTQKEQHVLMFLWSMATKNTMFNEWXSEWWDGYSITKPEEGTKHALKETVEPLEIISKYFSEEVLDELQEEPSSNTNTDFHQKDHIGDNVQLSNNKFDXTVKVQAAAQNKNEISKSTNRFHDNNKHGWNQEKEGITNPIKIEDQSFQFRHNSRHYDRLLKLSQDDLEKAIRRVTRDSSLDPQEKSYIIQNLLISRWIIRQKISFTEVDVKNDEQEFPGKHPSYRDPLKLIYGCKHYKRNCKIFCPCCNQLHTCIHCHNEVSDHIIDRKSITKMMCMECLNIQPINATCSTSSCKLTMAKYYCWICRLFEDEKEIYHCPYCNLCRVGKGLGTTYFHCMSCNACMSRSLLVHTCREKHLEDNCPICHEYIFTSLAPVKALPCGHVMHSACFQEYTGFNYTCPICSKSIVDMQDYFKKLDSLLAEEKMSDELSSRTQVILCNDCEKKGVAPFHWRYHKCPYCGSYNTRVL* 1249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4174 1248 ProSiteProfiles Zinc finger CHY-type profile. 1007 1076 IPR008913 GO:0008270
Amo01g4174 1248 CDD RING-H2_Pirh2 1141 1184 - -
Amo01g4174 1248 Gene3D nmb1532 protein domain like 600 763 - -
Amo01g4174 1248 Gene3D nmb1532 protein domain like 32 191 - -
Amo01g4174 1248 SUPERFAMILY RING/U-box 1129 1190 - -
Amo01g4174 1248 SMART ring_2 1142 1183 IPR001841 -
Amo01g4174 1248 Pfam Hemerythrin HHE cation binding domain 41 173 IPR012312 -
Amo01g4174 1248 Pfam Ring finger domain 1140 1183 IPR001841 -
Amo01g4174 1248 CDD Hr-like 606 744 - -
Amo01g4174 1248 ProSiteProfiles Zinc finger RING-type profile. 1142 1184 IPR001841 -
Amo01g4174 1248 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 24 1248 - -
Amo01g4174 1248 SUPERFAMILY Zinc hairpin stack 1079 1133 IPR037275 -
Amo01g4174 1248 SUPERFAMILY CHY zinc finger-like 1005 1070 IPR037274 GO:0008270
Amo01g4174 1248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1135 1186 IPR013083 -
Amo01g4174 1248 ProSiteProfiles Zinc finger CTCHY-type profile. 1078 1141 IPR017921 -
Amo01g4174 1248 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 24 1248 - -
Amo01g4174 1248 Pfam CHY zinc finger 1014 1088 IPR008913 GO:0008270
Amo01g4174 1248 Gene3D - 1213 1248 - -
Amo01g4174 1248 Pfam Zinc-ribbon 1188 1246 IPR039512 -
Amo01g4174 1248 CDD Hr-like 40 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4174 Amo-Chr1 117065399 117076209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g4174 32 839 C2H2 Transcription Factor Family AT3G18290 31.306 6.06e-120 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4174 K16276 - gmx:100802706 1835.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g4174 01 117065399 117076209 Amo11g2123 11 116620328 116639990 hybridization