Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4161 ATGGACGGCTACAGATTCTCGAACCGAAATCAAGGGTTGATATCGGCTTTTCCCCAGGTTCCAACGATGGCTTTCTTTGGTCGAATTGGGAATTTACTCAGAAATGCTGCAAACAAGCAGATCAGTTCAGAATTGCTCTCATCCCCATCTATTTTCCAGGCAATACGGTGCATGTCATCTGCTCCAAGCTCAAAACTGTTCATTGGAGGTGGATTCAAGTTTGAAATACCTTATAAGTTGCATCCATCATGTTTTATTTTTGGTGTTTCATATTCTACTGATGAGCAAGGTTTGAGGGAGGCATTTTCAAGATATGGAGAAGTTGTTGATGCAAGGATAATTGTGGATCGTGATAGTGGTAGATCCAGGGGATTTGGTTTTGTTACTTTCAGTTCAGCTGAGGAGGCATCAAGTGCTATTCAAGCCTTGGATGGACAGTCTGTGTATGTTTTCAGGATCTTCATGGTCGCCGGATTAGGTGGCTATGACAATAACTATTCCACTCCTGACAGTTATGGAAGTAGCAGTGCTGGTGGCAGTGGAGATTATGGTGGTAACAGTGGGAATTTTGGTGTTGCTGGTGGTGGTGGAGGAAGTGATAGCTATGGCAGTGCTCCTGGTTTTGATGCTGCTGCTGGTGTAGGTAGTCATGAAACATCTGCTGGTTTTGGTGGCAGTGATAATTATGCCAGTGCTGGTGGATTTGATGGAAGTGAGGGATCCGGATATGGCAGTAGTGACCAACTGGATAACAAAGAAACCAGCATTGAAGGCGACGATATGGACTTAGTAGAAGGAAATTACAAAGATGACAATGATGATACCGATGACTTTGCCAAAAGGGCTTGA 849 0.4393 MDGYRFSNRNQGLISAFPQVPTMAFFGRIGNLLRNAANKQISSELLSSPSIFQAIRCMSSAPSSKLFIGGGFKFEIPYKLHPSCFIFGVSYSTDEQGLREAFSRYGEVVDARIIVDRDSGRSRGFGFVTFSSAEEASSAIQALDGQSVYVFRIFMVAGLGGYDNNYSTPDSYGSSSAGGSGDYGGNSGNFGVAGGGGGSDSYGSAPGFDAAAGVGSHETSAGFGGSDNYASAGGFDGSEGSGYGSSDQLDNKETSIEGDDMDLVEGNYKDDNDDTDDFAKRA* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4161 282 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 23 281 - -
Amo01g4161 282 SMART rrm1_1 83 156 IPR000504 GO:0003723
Amo01g4161 282 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 23 281 - -
Amo01g4161 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 82 148 IPR000504 GO:0003723
Amo01g4161 282 Gene3D - 77 205 IPR012677 -
Amo01g4161 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 148 IPR000504 GO:0003723
Amo01g4161 282 SUPERFAMILY RNA-binding domain, RBD 84 189 IPR035979 GO:0003676
Amo01g4161 282 MobiDBLite consensus disorder prediction 225 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4161 Amo-Chr1 116750860 116753298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g4161 63 145 Eukaryotic Initiation Factors Gene Family AT3G16380 33.333 1.93e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4161 K12741 - gmx:100799124 189.119