Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4157 ATGGCGTCGTCATCGACGTCAGCGAAGCGGTGCCACTATGAGGTTCTCGGCCTCCCCCGTGACTGCACTCCGGAGGAGATCCGCTCCGCCTACCGCCGCCTAGCCCTGCAGCGCCACCCCGACAAGCTGGTCCAATCAGGTATCTCCCAATCGGAAGCCACTGCGCAGTTTCAGGAGCTTCAGCACGCCTACGAGGTACTCTCTGATCCCAAAGAACGCTCCTGGTACGACTCTCACCGCTCTCAGATCCTCTTCTCCGATCCCGACACCCTCCGCAACTCCTCCGTCCCCGACCTCTTCTCGTTTTTCTCCAATACCGTCTTCTCCGGCTACTCCGATTCCGGTAGAGGCTTCTACAAGGTGTATTCTGATGTTTTCGATAAGATTCACGCTAATGAGATCAATTTCGTGAAGAAGTTAGGGTTAGGTGTTGATTCCATTAGGCAAGCTCCTGTTATGGGTAATTTAGATAGCCCTTACGAGCAGGTTACTGCGTTTTATGGTTATTGGTTAGGGTTTTCGACTGTTATGGATTTTTGCTGGGTTGATGAGTATGATGTTTCGGCCGGTCCAAACCGGCGGTCGCGGCGGCTTATGGAGGAGGAAAATAACAAGGTAAGGAAGAAGGCGAGGAGGGAGTACAATGATACTGTGAGGAGATTGGCTGAGTTTGTGAAGAAGAGGGATAAGAGGGTGATTGATATGAAGATGAAGAAGGAGAAGGAGGAGTTGAAGAGGAAGGAGGAGCAGAAGGAGAAGAAGAAAAGGTTGGAAAAGGAGAGGAGGGAGAGGGCAATGGCATACGAGGAGCCGGAGTGGGCGAAGGTGGATGAGGGCGAGGACGGGGAGGATGATTTGTGGTTTGAGGAGGCAGAGGAGGAGGGGAAGAAGGGTGGTGAGAAGGAATTTTATTGTGTGTTGTGTGGGAAGAAGTTCAAGAGTGAGAAGCAGTGGAAGAACCATGAGCAGTCCAAGAAGCATAAGGAGAAGGTTGCTGAGTTTAGGGATTCGATTGAGGATGAGGATGAGGAGGTTGCTATGGAGGATTTGGAGAGTGAGATTGAGGTGGAAGGAAGAGAAGGGAAGGAAGGGTTGGAGAGTGAGGAGGATGCTGATCACGTGGTTGAGGATTTGGAGGAGAGGATTAGAGATAGTCTTAATGTTGCAGAGGAGAGCACTAGAAATGGAGTCGAGCCTGATGATGATGACGAGGAAGAATTTTATGATGCTTCACATGAAAAGGAAGGCAATGTGGTTAGTGTCTCTTTAGATGGTGATGATGATGATGAAATTGGTGCTCTTGAAGCAATGATTGCAGGTCACAAGAGCAGAAAGCCACATGCTTCAACACGCAAGCCCAATGCCCCAGTGCCTCCAACTCAAATTGAGAATGAGGATGATGGGGTTGGCCCTATGGAATACAAAAACCGGAAGGGCGCAAGAAAGAAACGCGGATCCAAGAAAGAAAAGGGTAGGAAAAATCCAGAAGAATCCCGCACAGCAGCCGTCAATGGCGATGAAGAGCATAATAACAACAACGATGATGGGAATGGCAATTCTCATGCAGAGGAGTCTTCCTTCCAATTTAACGTGGAGAATGTGATTAATGGTAAAGAGAACGGGCATGATGGTAGAGATAAGACTTCAAATAAACCAGCTGATAAGAGAGGAGATGCAAAGGACACAAAATCCAAAGCTAAAACTTCATCAAAAGGAAGAAAAGCCAAGGGTGCGTCAAAGAATCATGGCAATACTTGCGAGACCTGTGGAGAGGAGTTTGAGTCAAGGAATAAATTACATAAACATCTTGGCGATTCTGGGCATGCAAAAATAAAAGGTAGATAG 1845 0.4829 MASSSTSAKRCHYEVLGLPRDCTPEEIRSAYRRLALQRHPDKLVQSGISQSEATAQFQELQHAYEVLSDPKERSWYDSHRSQILFSDPDTLRNSSVPDLFSFFSNTVFSGYSDSGRGFYKVYSDVFDKIHANEINFVKKLGLGVDSIRQAPVMGNLDSPYEQVTAFYGYWLGFSTVMDFCWVDEYDVSAGPNRRSRRLMEEENNKVRKKARREYNDTVRRLAEFVKKRDKRVIDMKMKKEKEELKRKEEQKEKKKRLEKERRERAMAYEEPEWAKVDEGEDGEDDLWFEEAEEEGKKGGEKEFYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFRDSIEDEDEEVAMEDLESEIEVEGREGKEGLESEEDADHVVEDLEERIRDSLNVAEESTRNGVEPDDDDEEEFYDASHEKEGNVVSVSLDGDDDDEIGALEAMIAGHKSRKPHASTRKPNAPVPPTQIENEDDGVGPMEYKNRKGARKKRGSKKEKGRKNPEESRTAAVNGDEEHNNNNDDGNGNSHAEESSFQFNVENVINGKENGHDGRDKTSNKPADKRGDAKDTKSKAKTSSKGRKAKGASKNHGNTCETCGEEFESRNKLHKHLGDSGHAKIKGR* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4157 614 Coils Coil 375 395 - -
Amo01g4157 614 SUPERFAMILY Chaperone J-domain 7 110 IPR036869 -
Amo01g4157 614 MobiDBLite consensus disorder prediction 336 354 - -
Amo01g4157 614 Pfam Zinc-finger double-stranded RNA-binding 303 328 IPR022755 -
Amo01g4157 614 SMART c2h2final6 303 327 IPR013087 -
Amo01g4157 614 SMART c2h2final6 584 608 IPR013087 -
Amo01g4157 614 MobiDBLite consensus disorder prediction 490 514 - -
Amo01g4157 614 Pfam DnaJ domain 12 77 IPR001623 -
Amo01g4157 614 ProSitePatterns Zinc finger C2H2 type domain signature. 305 327 IPR013087 -
Amo01g4157 614 ProSiteProfiles dnaJ domain profile. 11 80 IPR001623 -
Amo01g4157 614 MobiDBLite consensus disorder prediction 538 568 - -
Amo01g4157 614 MobiDBLite consensus disorder prediction 318 335 - -
Amo01g4157 614 Coils Coil 324 344 - -
Amo01g4157 614 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 6 614 IPR044648 -
Amo01g4157 614 Gene3D Classic Zinc Finger 290 349 - -
Amo01g4157 614 Coils Coil 230 270 - -
Amo01g4157 614 SUPERFAMILY beta-beta-alpha zinc fingers 291 348 IPR036236 -
Amo01g4157 614 MobiDBLite consensus disorder prediction 242 263 - -
Amo01g4157 614 MobiDBLite consensus disorder prediction 355 369 - -
Amo01g4157 614 ProSitePatterns Zinc finger C2H2 type domain signature. 586 608 IPR013087 -
Amo01g4157 614 MobiDBLite consensus disorder prediction 515 535 - -
Amo01g4157 614 SMART ZnF_U1_5 300 334 IPR003604 GO:0003676|GO:0008270
Amo01g4157 614 ProSitePatterns Nt-dnaJ domain signature. 57 76 IPR018253 -
Amo01g4157 614 MobiDBLite consensus disorder prediction 587 614 - -
Amo01g4157 614 MobiDBLite consensus disorder prediction 318 614 - -
Amo01g4157 614 SMART dnaj_3 10 72 IPR001623 -
Amo01g4157 614 CDD DnaJ 11 69 IPR001623 -
Amo01g4157 614 Gene3D DnaJ domain 1 92 IPR036869 -
Amo01g4157 614 PRINTS DnaJ domain signature 52 72 IPR001623 -
Amo01g4157 614 PRINTS DnaJ domain signature 31 46 IPR001623 -
Amo01g4157 614 PRINTS DnaJ domain signature 13 31 IPR001623 -
Amo01g4157 614 ProSiteProfiles Zinc finger C2H2 type domain profile. 303 332 IPR013087 -
Amo01g4157 614 ProSiteProfiles Zinc finger C2H2 type domain profile. 584 613 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4157 Amo-Chr1 116693413 116697343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g4157 1 614 C2H2 Transcription Factor Family AT1G74250 49.155 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo01g4157 DnaJ 8.4e-22 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4157 K09506 - gmx:100788305 782.326