Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4122 ATGGCTTCTTGCAATTACTTCTTCAACCCTCAACAAATAGATGAATATCCTTTCCCTCTTCCCATTCAATGTTCCTTATATGATTATGATTATTACTATTATTCCAGTGAAAACAGTAACGAATATCCACCACTGGAATGTTGGGCACACGAGTTTTCAATACAAGACATGGAGTGTTACCCTTCACTTCCTTTTTATGAAACTCTCTCCATCGAACCAATTTCAACTATTAAAGACTATGACTTTTATGATATTAAGGAAGGGTTTTCTGTCTGGAACGAAGTGGATGCCGGCTTTGATTGTTCAGAAAAAGTTTCATCATCATCATCACTTTCCAACAACAACAACAATGAAGAAAATAAGAGCATCAGGAGGGTCATTAATAAACGAGTTTGTAGAGAAGAGAGAAGTAGCAACAGTACGAAAATGTTATCAAGGAAGATGATATCGGATTATTTCTACATGCCGATAACTCAAGCAGCGAAGGAACTTGATGTGGGCTTAACACTTTTGAAGAAGAGATGCAGAGAGTTAGGGATTCGAAGGTGGCCTCATCGGAAACTTATGAGTCTTCAAACCCTCATCAATAATGTTCAGGAGCTAGGGAAGGAAGAGGGGAGAGAGAGTGAAGAGAAGCTAAGGAATGCAATTGAGATATTAGAGAAGGAAAAGAAGCTTCTGGAAGAAATGCCTGATTTGCAACTTGAAGACAATACCAAAAGACTTAGACAAGCATGTTTCAAGGCCAACTACAAGAAGAGGAAGCTAATAATGGGTAGTAGTTCTTCAAATTCATCCATGGAATCTTCTTCATCATATAACATTATTGGACATAATGCAACAAGAATAACTAGTAGTAAGGGAGACACGATGGATAGTGTTGGATTTATTAGCTTTGAGGATGAAGAAGATCAAGAACGTGACATCAAATATGCGTTGTCTTTGCCTCCTTTGTCCCATAACATTCAAATGGTCTAG 978 0.3783 MASCNYFFNPQQIDEYPFPLPIQCSLYDYDYYYYSSENSNEYPPLECWAHEFSIQDMECYPSLPFYETLSIEPISTIKDYDFYDIKEGFSVWNEVDAGFDCSEKVSSSSSLSNNNNNEENKSIRRVINKRVCREERSSNSTKMLSRKMISDYFYMPITQAAKELDVGLTLLKKRCRELGIRRWPHRKLMSLQTLINNVQELGKEEGRESEEKLRNAIEILEKEKKLLEEMPDLQLEDNTKRLRQACFKANYKKRKLIMGSSSSNSSMESSSSYNIIGHNATRITSSKGDTMDSVGFISFEDEEDQERDIKYALSLPPLSHNIQMV* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4122 325 Pfam RWP-RK domain 144 191 IPR003035 -
Amo01g4122 325 ProSiteProfiles RWP-RK domain profile. 127 211 IPR003035 -
Amo01g4122 325 PANTHER PROTEIN RKD1-RELATED 40 270 - -
Amo01g4122 325 PANTHER PROTEIN RKD4 40 270 IPR044607 GO:0003700
Amo01g4122 325 Coils Coil 203 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4122 Amo-Chr1 116109926 116111574 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g4122 130 255 AtRKD Transcription Factor Family AT1G18790 70.312 8.79e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Amo01g4122 RWP-RK 2.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4122 - - adu:107470725 489.189