Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4119 AAGTTTAGCTCCTCATGGGCTGCGTGGTGGTCAAGCAAGGGGTGTCCTCGGAAGAGCGAGTTGAGTGACTCCTCCAGCTTCAGGCTGGTCGGCAATTTGCAAAAGTACGTCGAAGGTGAGCAGGCGGCCGCCGGTTGGCCCGCTTGGCTTAGCTCCGTCGCCGCTGAGGCCATTCAGGGTTGGGTTCCCCTCCGTGCTGATGCATTTGAGAAGCTTGAGAAGATTGGGCAGGGTACATATAGTAGTGTTTTCAGAGCAAAGGAGCTTGAGACTGGGAAGATAGTGGCTCTGAAGAAGGTCAGGTTTGACAATTTCGAGCCAGAGAGCGTCCGGTTTATGGCGCGGGAGATAATGATTCTAAGAAGGCTTGATCATCCCAACATCATCAAATTGGAGGGCTTGATTACTTCCAGGTTGTCTTGTAGCATCTACCTTGTGTTTGAGTACATGCAACATGACATCACAGGGCTATTGTCTAGACCAGAAATCAAGTTTAYTGAATCACAGATTAAATGCTACATGAAACAGTTGTTATCTGGTCTTGAGCATTGTCACTCGAAGGGTGTGATGCACCGAGACATCAAGGGATCGAATCTTTTGGTGAATGATGAAGGCATATTGAAGGTGGCAGATTTTGGATTGGCAAACTGGTGCAATTCAGGAAACAACAAGCAGCCCCTCACAAGTCGTGTTGTCACCTTGTGGTACCGTCCGCCGGAACTCTTGCTCGGCTCGACAGATTATAGCCCATCTGTGGATCTCTGGAGTGTTGGCTGTGTATTTGCAGAGCTACTTATTGGAAAGCCTATACTTCAGGGAAGAACTGAGGTTGAACAATTGCATAAAATCTTCAAGCTCTGCGGCTCTCCACCTGATGACTACTGGAAAAAGACCAAACTTCCTCATGCAACTTTGTTCAAGCCACAACAACCATACGATAGTAGCCTCTGGGAGACYTTTAAAGATTTGCCTGCGACCAGCATAAATGTGCTACAAACGCTTCTTTCTGTCGAACCGAGCAAACGTGGGACTGCCACATCTGCTCTCTCATCAGAGTACTTCAAAACAAAACCATATGCATGTGATCCATCAAGCATGCCAATATACCCACCTAGCAAGGAGATTGACGCAAAGCACCAGGAGGAGTCAAAAAGGAAAAAGATTAGCGGCCGAGCTTGTAGASCAGAATCACGAAAACCATCAAGAAAGCCACTAGCACTCAGTAAATTAGCCCCAGCTGAGGATTTGACAAGTCAAATTCAAACTTCCCAAAGACAAAAAGTTGATGATAGCTCTTGCCAAGTCCTTAAAGAAGAGAACATTGACATAGATGAGGAGGCACCAAAGCTATCTAGTGATAAACCACWAGAACAAGATGGTTCCCATATGAAGGATGAAACAAAAGTAGATATTCCCTTTCCAGGACCATTGCAAGTTTCAAAATCAAGTGGCTTTGCATGGGCGAAAAGGCGTAAAGATGACACCTCAATTAGAGCACATTCTCGATCAATTTCAAGAGGGCACTTGTATAATTCCTTAGAAACTTCGACAGTAACTTCAAGGAATAATTCTGAATCCAGAAACTATGAAAACAAGGAATTCTGTGGAGGWCGCTCCAACTCTAGGGGCCGTGATCTACTTGAAATTTCTAAGCTTGTAATGCAGAACCAGTGGAATAAGTTTGATCGTCCCGACTCATTTGATACTTCTGATGAGTACCATTCACAAGAACTATCTATGACACTTTATCACAGAGAAGACTCATTATCCAAGAGAAGTAACCTGAGTTCACAGGACCAAGGAGACACAGTTGATTTTTCAGGACCCTTAATATCTCAAATGCACACCGTCGATGAGATCTTAGAAAGACATGAGCGACACATACGGCGTACTGTCCGGCGATCSTGGTTTCAGAAAGATAAGAAGAATGGGAAGTAA 1938 0.4489 KFSSSWAAWWSSKGCPRKSELSDSSSFRLVGNLQKYVEGEQAAAGWPAWLSSVAAEAIQGWVPLRADAFEKLEKIGQGTYSSVFRAKELETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMQHDITGLLSRPEIKFXESQIKCYMKQLLSGLEHCHSKGVMHRDIKGSNLLVNDEGILKVADFGLANWCNSGNNKQPLTSRVVTLWYRPPELLLGSTDYSPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWKKTKLPHATLFKPQQPYDSSLWETFKDLPATSINVLQTLLSVEPSKRGTATSALSSEYFKTKPYACDPSSMPIYPPSKEIDAKHQEESKRKKISGRACRXESRKPSRKPLALSKLAPAEDLTSQIQTSQRQKVDDSSCQVLKEENIDIDEEAPKLSSDKPXEQDGSHMKDETKVDIPFPGPLQVSKSSGFAWAKRRKDDTSIRAHSRSISRGHLYNSLETSTVTSRNNSESRNYENKEFCGGRSNSRGRDLLEISKLVMQNQWNKFDRPDSFDTSDEYHSQELSMTLYHREDSLSKRSNLSSQDQGDTVDFSGPLISQMHTVDEILERHERHIRRTVRRSWFQKDKKNGK* 646
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4119 645 MobiDBLite consensus disorder prediction 414 430 - -
Amo01g4119 645 SUPERFAMILY Protein kinase-like (PK-like) 63 361 IPR011009 -
Amo01g4119 645 MobiDBLite consensus disorder prediction 515 537 - -
Amo01g4119 645 MobiDBLite consensus disorder prediction 589 609 - -
Amo01g4119 645 ProSiteProfiles Protein kinase domain profile. 69 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g4119 645 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Amo01g4119 645 MobiDBLite consensus disorder prediction 593 609 - -
Amo01g4119 645 MobiDBLite consensus disorder prediction 365 475 - -
Amo01g4119 645 Gene3D Phosphorylase Kinase; domain 1 56 151 - -
Amo01g4119 645 Gene3D Transferase(Phosphotransferase) domain 1 152 393 - -
Amo01g4119 645 MobiDBLite consensus disorder prediction 431 469 - -
Amo01g4119 645 CDD STKc_CDK9_like 69 354 - -
Amo01g4119 645 Pfam Protein kinase domain 69 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g4119 645 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 27 638 - -
Amo01g4119 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Amo01g4119 645 SMART serkin_6 69 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g4119 645 MobiDBLite consensus disorder prediction 374 403 - -
Amo01g4119 645 PANTHER CELL DIVISION PROTEIN KINASE 27 638 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Amo01g4119 Amo-Chr1 116062992 116067242 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g4119 61 414 Core Cell Cycle Gene Families AT5G10270 48.378 1.66e-110 340
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Amo01g4119 Pkinase 7.1e-69 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4119 - - aip:107633955 1228