LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo01g4119	AAGTTTAGCTCCTCATGGGCTGCGTGGTGGTCAAGCAAGGGGTGTCCTCGGAAGAGCGAGTTGAGTGACTCCTCCAGCTTCAGGCTGGTCGGCAATTTGCAAAAGTACGTCGAAGGTGAGCAGGCGGCCGCCGGTTGGCCCGCTTGGCTTAGCTCCGTCGCCGCTGAGGCCATTCAGGGTTGGGTTCCCCTCCGTGCTGATGCATTTGAGAAGCTTGAGAAGATTGGGCAGGGTACATATAGTAGTGTTTTCAGAGCAAAGGAGCTTGAGACTGGGAAGATAGTGGCTCTGAAGAAGGTCAGGTTTGACAATTTCGAGCCAGAGAGCGTCCGGTTTATGGCGCGGGAGATAATGATTCTAAGAAGGCTTGATCATCCCAACATCATCAAATTGGAGGGCTTGATTACTTCCAGGTTGTCTTGTAGCATCTACCTTGTGTTTGAGTACATGCAACATGACATCACAGGGCTATTGTCTAGACCAGAAATCAAGTTTAYTGAATCACAGATTAAATGCTACATGAAACAGTTGTTATCTGGTCTTGAGCATTGTCACTCGAAGGGTGTGATGCACCGAGACATCAAGGGATCGAATCTTTTGGTGAATGATGAAGGCATATTGAAGGTGGCAGATTTTGGATTGGCAAACTGGTGCAATTCAGGAAACAACAAGCAGCCCCTCACAAGTCGTGTTGTCACCTTGTGGTACCGTCCGCCGGAACTCTTGCTCGGCTCGACAGATTATAGCCCATCTGTGGATCTCTGGAGTGTTGGCTGTGTATTTGCAGAGCTACTTATTGGAAAGCCTATACTTCAGGGAAGAACTGAGGTTGAACAATTGCATAAAATCTTCAAGCTCTGCGGCTCTCCACCTGATGACTACTGGAAAAAGACCAAACTTCCTCATGCAACTTTGTTCAAGCCACAACAACCATACGATAGTAGCCTCTGGGAGACYTTTAAAGATTTGCCTGCGACCAGCATAAATGTGCTACAAACGCTTCTTTCTGTCGAACCGAGCAAACGTGGGACTGCCACATCTGCTCTCTCATCAGAGTACTTCAAAACAAAACCATATGCATGTGATCCATCAAGCATGCCAATATACCCACCTAGCAAGGAGATTGACGCAAAGCACCAGGAGGAGTCAAAAAGGAAAAAGATTAGCGGCCGAGCTTGTAGASCAGAATCACGAAAACCATCAAGAAAGCCACTAGCACTCAGTAAATTAGCCCCAGCTGAGGATTTGACAAGTCAAATTCAAACTTCCCAAAGACAAAAAGTTGATGATAGCTCTTGCCAAGTCCTTAAAGAAGAGAACATTGACATAGATGAGGAGGCACCAAAGCTATCTAGTGATAAACCACWAGAACAAGATGGTTCCCATATGAAGGATGAAACAAAAGTAGATATTCCCTTTCCAGGACCATTGCAAGTTTCAAAATCAAGTGGCTTTGCATGGGCGAAAAGGCGTAAAGATGACACCTCAATTAGAGCACATTCTCGATCAATTTCAAGAGGGCACTTGTATAATTCCTTAGAAACTTCGACAGTAACTTCAAGGAATAATTCTGAATCCAGAAACTATGAAAACAAGGAATTCTGTGGAGGWCGCTCCAACTCTAGGGGCCGTGATCTACTTGAAATTTCTAAGCTTGTAATGCAGAACCAGTGGAATAAGTTTGATCGTCCCGACTCATTTGATACTTCTGATGAGTACCATTCACAAGAACTATCTATGACACTTTATCACAGAGAAGACTCATTATCCAAGAGAAGTAACCTGAGTTCACAGGACCAAGGAGACACAGTTGATTTTTCAGGACCCTTAATATCTCAAATGCACACCGTCGATGAGATCTTAGAAAGACATGAGCGACACATACGGCGTACTGTCCGGCGATCSTGGTTTCAGAAAGATAAGAAGAATGGGAAGTAA	1938	0.4489	KFSSSWAAWWSSKGCPRKSELSDSSSFRLVGNLQKYVEGEQAAAGWPAWLSSVAAEAIQGWVPLRADAFEKLEKIGQGTYSSVFRAKELETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMQHDITGLLSRPEIKFXESQIKCYMKQLLSGLEHCHSKGVMHRDIKGSNLLVNDEGILKVADFGLANWCNSGNNKQPLTSRVVTLWYRPPELLLGSTDYSPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWKKTKLPHATLFKPQQPYDSSLWETFKDLPATSINVLQTLLSVEPSKRGTATSALSSEYFKTKPYACDPSSMPIYPPSKEIDAKHQEESKRKKISGRACRXESRKPSRKPLALSKLAPAEDLTSQIQTSQRQKVDDSSCQVLKEENIDIDEEAPKLSSDKPXEQDGSHMKDETKVDIPFPGPLQVSKSSGFAWAKRRKDDTSIRAHSRSISRGHLYNSLETSTVTSRNNSESRNYENKEFCGGRSNSRGRDLLEISKLVMQNQWNKFDRPDSFDTSDEYHSQELSMTLYHREDSLSKRSNLSSQDQGDTVDFSGPLISQMHTVDEILERHERHIRRTVRRSWFQKDKKNGK*	646

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo01g4119	645	MobiDBLite	consensus disorder prediction	414	430	-	-
	Amo01g4119	645	SUPERFAMILY	Protein kinase-like (PK-like)	63	361	IPR011009	-
	Amo01g4119	645	MobiDBLite	consensus disorder prediction	515	537	-	-
	Amo01g4119	645	MobiDBLite	consensus disorder prediction	589	609	-	-
	Amo01g4119	645	ProSiteProfiles	Protein kinase domain profile.	69	354	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo01g4119	645	ProSitePatterns	Protein kinases ATP-binding region signature.	75	98	IPR017441	GO:0005524
	Amo01g4119	645	MobiDBLite	consensus disorder prediction	593	609	-	-
	Amo01g4119	645	MobiDBLite	consensus disorder prediction	365	475	-	-
	Amo01g4119	645	Gene3D	Phosphorylase Kinase; domain 1	56	151	-	-
	Amo01g4119	645	Gene3D	Transferase(Phosphotransferase) domain 1	152	393	-	-
	Amo01g4119	645	MobiDBLite	consensus disorder prediction	431	469	-	-
	Amo01g4119	645	CDD	STKc_CDK9_like	69	354	-	-
	Amo01g4119	645	Pfam	Protein kinase domain	69	354	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo01g4119	645	PANTHER	BINDING PROTEIN, PUTATIVE-RELATED	27	638	-	-
	Amo01g4119	645	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	189	201	IPR008271	GO:0004672\|GO:0006468
	Amo01g4119	645	SMART	serkin_6	69	354	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo01g4119	645	MobiDBLite	consensus disorder prediction	374	403	-	-
	Amo01g4119	645	PANTHER	CELL DIVISION PROTEIN KINASE	27	638	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo01g4119	Amo-Chr1	116062992	116067242	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo01g4119	61	414	Core Cell Cycle Gene Families	AT5G10270	48.378	1.66e-110	340

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Amo01g4119		Pkinase	7.1e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo01g4119	-		-	aip:107633955	1228