Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4108 ATGGAATCTGAAGTACAAGAGAGGAACTTGAGGCCAACTTCTACTATGGCGGAAAACCCTATAGTAATGTCTTCTCCTAGTATGCCATCCAATGAAGATGATCATGCCATTCTCAAAGCATCTAGTCCTTCATCTGAGGAACTAAGTTTTAAAAAGGAAGACGTTCACGCAACACGCGAAATTTCAAGTCATCCCAAATCAGTAAATGATTTTGCTTCCGCTAAAGATGGCAAAAGTCAAGTTTTAGACTCCAGCCAACAGATGAAATCTGAGGGACTAGGGGGGGACTTGAGGCCAGCTTCTACCGTGGCAGAAAACCCTGTAATAAAGCCTTCTCCTAGTCTGTGTTCCAAAGAAGAGAATTGTGTCATTCTCAAAGCATGTGTTGTTTCTGCTCCTTCATCTGACACGCTAGCTTTGAAAAAGGAACAAGTTTTCCCAACTCCAAAAATTTCAAATTCTTGTCATCCCAAATCAGTTAAAGACTTGGCCCCAGCAGATGATGGCAAAAGTCAAGTTTTAGATGTTGATGGTGCAAATACTGGAATTGTTCAACTAACATACAATGTTGGAGGGTGCAATGAACCAAGTAACGATAGCAAAGCTGATTTAGGTGGTGTTAAGGATATGGATTCTGGGGCCACCAAGTTGTCTAGTAACATTGGAAAAGACATCGCTATTGGCCTTCCTCAAACGGATGCCTTTGTTGGGAGTGCCAATGGCAGTCAGAATTCCTTGAAAAGAAATGTACCATTGGAAGTAGAATCAAAGGATGATGTAAAACAAATCAAATCAAGGACTATAGTTCCGTCTTCGAATACTGAGATGAAGGATGGAAACAAACACCAGGGAATTATATGTGCCTTTTTTGCTAAAGGGTGGTGCATCAGAGGTAATTCCTGTAGCTTTCTTCATATAAAAGATTCTGCAAAGGATACTGGCCAGGAGACTCAGGGGGACTTGGATAAAGCAAAGCAGAAGAGAGAACTGGAATTAGAAGAAGGTACCAGGGACAATATCAAAAGAACCAGGACGAATGACCAAGAAGAAATCTCAGACTGGCATCCTTGTCAAGAAAAAAATAAGTACCAGTTGAGGGACATCTTGTTTCCAGAGAGTAGATTTACAAGCAAATATTTCAACACAAATCTCTCATCCTGTTCAAATCATGCAGAGGGATTGAGTATAGCTCAAAACCATCATATGTACAATGGATATACTTCTGCAGTTTTGAGTCGTTCACCTAAGTTGAGCTTTGTTACTCAGAAACTTTTGAATAGTGACAAGGAATATAATGCCTCTAGATCTGCTTTCTCTGGCTCAGAGCGGGAGGAGTTGCCGTCGGTTGGTTCATCTAGGATTCCAATACACTCTGCCGCATATATATCAAAAATATGTTCTTATGATTGGGAACCTTCTGTGCCATTTCGACCATCATTTTTCATTACGTCAATGAATGTATCATCTCTGGGAGACCTGTATGACCCTCTTCGAGATAGCATTGAGATACCAAATATAGGAGATGGGTCTTTGAAAGCTTCCCTCTTAATTCATGGATCATCCATCCAGGCTTCATCACAGGTGCTGAAATATGGCGATTCAGCTGTAGTTGGGAAACATATGTCTGATTTTAATGATGAGAAAAGTTCTGTATCTTCTCATAATAGATTTGGTGAGAACCAACCAAACAAAAATTTGGTTCCTCATGAAAAAGATTGTCATGCAACTGAAATGGAAATAACATCAGGGACTTGTATGAACTACCCCAATGGTAAAATCGGCATGGGGAAAGATGTTACAAAATCAGAGAGAGAATGGACTGAACATGATGCCAAACATCATGGTGAAGGATCAGCGCACAAGAAGAGAGTAGATAGGGATAAGAAAATTAATGATACAGATGCCGATTTGCAGACTGACTGCAGTGTGCAGAAGGATTCCAAAGCAATGAGACACTTTCGTGCAGCTCTTGTTGACTTGGTGAAAGAGTTGTTAAAACCATCTTGGCACGAGGGCCGTCTTAGTAAGGATGCACATATCTTGATAGTTAAAAGATCAGTTGACAAGATACTCAGCACCTTAGAGCCTCAGCAAATTCCAACCACTATAGATGCTACTAAGCAATATGTTTCTTTGTATCGAGGAAAAATTGCAAAGATGGTCAATGGATATATCAACAAATTTGGCAAGTCTTGA 2196 0.403 MESEVQERNLRPTSTMAENPIVMSSPSMPSNEDDHAILKASSPSSEELSFKKEDVHATREISSHPKSVNDFASAKDGKSQVLDSSQQMKSEGLGGDLRPASTVAENPVIKPSPSLCSKEENCVILKACVVSAPSSDTLALKKEQVFPTPKISNSCHPKSVKDLAPADDGKSQVLDVDGANTGIVQLTYNVGGCNEPSNDSKADLGGVKDMDSGATKLSSNIGKDIAIGLPQTDAFVGSANGSQNSLKRNVPLEVESKDDVKQIKSRTIVPSSNTEMKDGNKHQGIICAFFAKGWCIRGNSCSFLHIKDSAKDTGQETQGDLDKAKQKRELELEEGTRDNIKRTRTNDQEEISDWHPCQEKNKYQLRDILFPESRFTSKYFNTNLSSCSNHAEGLSIAQNHHMYNGYTSAVLSRSPKLSFVTQKLLNSDKEYNASRSAFSGSEREELPSVGSSRIPIHSAAYISKICSYDWEPSVPFRPSFFITSMNVSSLGDLYDPLRDSIEIPNIGDGSLKASLLIHGSSIQASSQVLKYGDSAVVGKHMSDFNDEKSSVSSHNRFGENQPNKNLVPHEKDCHATEMEITSGTCMNYPNGKIGMGKDVTKSEREWTEHDAKHHGEGSAHKKRVDRDKKINDTDADLQTDCSVQKDSKAMRHFRAALVDLVKELLKPSWHEGRLSKDAHILIVKRSVDKILSTLEPQQIPTTIDATKQYVSLYRGKIAKMVNGYINKFGKS* 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4108 731 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 45 731 - -
Amo01g4108 731 MobiDBLite consensus disorder prediction 46 63 - -
Amo01g4108 731 MobiDBLite consensus disorder prediction 1 100 - -
Amo01g4108 731 MobiDBLite consensus disorder prediction 603 631 - -
Amo01g4108 731 ProSiteProfiles Zinc finger C3H1-type profile. 286 308 IPR000571 GO:0046872
Amo01g4108 731 MobiDBLite consensus disorder prediction 545 568 - -
Amo01g4108 731 MobiDBLite consensus disorder prediction 8 31 - -
Amo01g4108 731 SUPERFAMILY CCCH zinc finger 282 305 IPR036855 GO:0046872
Amo01g4108 731 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 45 731 - -
Amo01g4108 731 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 286 305 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4108 Amo-Chr1 115946151 115948690 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo01g4108 zf-CCCH 4.5e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4108 - - adu:107468208 1450.65