Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4106 ATGGAGAGGGAGGAGCTGAATTTGAACAAAGAGAGTAATAACAACGGTGTTGGAGGTAATAACAGTAAGAGTGGCGGTGATGGCTTCATTGACAGAAGCAAAGTTAGGATTTTGTTGTGTGATAACGATTCCAAGAGTTCCGAAGAGGTTTTTACTCTTCTAATTCGATGCTCTTATCAAGTTGTTTCTGTAAAGTCAGCAAGGCAAGTAATTGACGCACTGAATGCAGAGCGACAATATATAGACATCATACTAGCTGAAGTCGACCTTCCAATAAAAAAGGGCATGAAGATGCTTAAGTACATAGCACGCGACAAAGAATTGCGCCGAATTCCTGTTATAATGATGTCTGCACAAGATGAGGTATCCATTGTTGTTAAGTGCTTGAAACTTGGAGCAGCAGACTATCTAGTTAAGCCTTTACGCACTAATGAACTATTAAATTTGTGGACGCACATGTGGAGAAGGAGACGCATGCTTGGACTTGTAGAGAACAACATCTTGAATTATGACTTCGACCTGGTAGTGTCTGACCCGAGCGATGCAAATACAAACAGTACCACCTTATTTTCTGATGACACAGATGATAAGTCCAAAAGAAGCAGTAATCCAGAGGCAGGAATATCTATCCAACAACAAGAGGCTACTGTTGCCATGGATATTGTTGTTGAGGAGCATCCTAATTCTTTGGTGTCGCCTGATGTGCCTGGAATTAGTGATCGCCGAACAGGTGCTCAGGGGCAGCATCAATCATACAACAATATTACTGAGGGTTATTTTTCATCTGCTCCAAAGAAGAGTGAACTAAGGATAGGAGAATCATCAGCCTTCTTCACTTATGTCAAAGCAGCAACAACAATAAGGAGCAACATTGAAGAGATTGTTCATCTTGACAAGAATGCTACTAAACAAGTGAGAATGGAAGACATGGATCAAGCATGTGCTCAAGAGAAGGGTAACCTTCAAAGACATGAGAATGGAGAGACACTTGAAAGCCATTCACAAGAGGACTTACCCAGCAGCAATAGTATACCTGATTCTTTTTCTATTGAGAGATCTTGCACTCCTCCTGCATCAATGGAAGTTTCACAGCAAAAGCATCACAAGGAAGAGCATCGTCAGGGTGTGGTGCATCCAAGAAATGGAAGCCATGGTTCCGAGCCTGATGCATCTAGCATGAATGCTCACCATGCTTATCCATATTATATGTCAGGAGTTGTTAATCATGTTATGATGCCATCATCAGCACAACTGTATCAAAAGAATATGCAGGAGCTACAGAATCATACTAGTTCGTCTATGATTGCACAATACAATCATCTTCCCCACTGCCCTCCTCATCCAAACGGGATGACGTCCTTTCCATATTATCCAATGGGTATATGCTTACAGCCTGGTCAGATTCCTGCGAATCATTCATGGCAACAATTAGGAGGTTCGAGTTCATCAGAGGTGAAATTAAGCAAAGTTGATAGAAGAGAAGCGGCGTTAATGAAGTTTAGACAGAAAAGGAAAGAACGTTGTTTTGATAAGAAAATTAGGTATGTCAATAGGAAACGACTGGCTGAAAGGCGGCCCCGTGTTAGGGGACAATTTGTCAGAAAGTTGAATGGTGTCAATGTGGATCTCAATGGACACCCTGCCTCCACTGATTATGATGACGAAGATGACGATGAGGAGGAAGAAGACAACCATGTAGCAAATGATTCCTCTCCTGAGGATGCATGA 1728 0.4196 MEREELNLNKESNNNGVGGNNSKSGGDGFIDRSKVRILLCDNDSKSSEEVFTLLIRCSYQVVSVKSARQVIDALNAERQYIDIILAEVDLPIKKGMKMLKYIARDKELRRIPVIMMSAQDEVSIVVKCLKLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVENNILNYDFDLVVSDPSDANTNSTTLFSDDTDDKSKRSSNPEAGISIQQQEATVAMDIVVEEHPNSLVSPDVPGISDRRTGAQGQHQSYNNITEGYFSSAPKKSELRIGESSAFFTYVKAATTIRSNIEEIVHLDKNATKQVRMEDMDQACAQEKGNLQRHENGETLESHSQEDLPSSNSIPDSFSIERSCTPPASMEVSQQKHHKEEHRQGVVHPRNGSHGSEPDASSMNAHHAYPYYMSGVVNHVMMPSSAQLYQKNMQELQNHTSSSMIAQYNHLPHCPPHPNGMTSFPYYPMGICLQPGQIPANHSWQQLGGSSSSEVKLSKVDRREAALMKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKLNGVNVDLNGHPASTDYDDEDDDEEEEDNHVANDSSPEDA* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4106 575 MobiDBLite consensus disorder prediction 539 575 - -
Amo01g4106 575 Pfam Response regulator receiver domain 37 148 IPR001789 GO:0000160
Amo01g4106 575 Gene3D - 35 229 - -
Amo01g4106 575 SMART REC_2 35 150 IPR001789 GO:0000160
Amo01g4106 575 MobiDBLite consensus disorder prediction 551 567 - -
Amo01g4106 575 MobiDBLite consensus disorder prediction 1 25 - -
Amo01g4106 575 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 558 IPR045279 GO:0009736
Amo01g4106 575 MobiDBLite consensus disorder prediction 363 378 - -
Amo01g4106 575 ProSiteProfiles CCT domain profile. 493 535 IPR010402 GO:0005515
Amo01g4106 575 MobiDBLite consensus disorder prediction 185 208 - -
Amo01g4106 575 ProSiteProfiles Response regulatory domain profile. 36 154 IPR001789 GO:0000160
Amo01g4106 575 MobiDBLite consensus disorder prediction 327 392 - -
Amo01g4106 575 Pfam CCT motif 493 535 IPR010402 GO:0005515
Amo01g4106 575 PANTHER RESPONSE REGULATOR AND TRANSCRIPTION FACTOR RR-A-TYPE FAMILY-RELATED 4 558 - -
Amo01g4106 575 SUPERFAMILY CheY-like 33 161 IPR011006 -
Amo01g4106 575 MobiDBLite consensus disorder prediction 333 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4106 Amo-Chr1 115927419 115932360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g4106 20 574 Response Regulator Gene Family AT5G61380 52.298 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Amo01g4106 Response_reg 1.3e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4106 K12127 - gmx:100786522 865.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g4106 01 115927419 115932360 Amo11g2291 11 123544493 123549492 hybridization