Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4101 CCCACACTCTACAAAGCACAAAACCCTCCCTTTCTTCTTCTTCCAATTCCAACGCGCTCTCTCTTTCTCTATCTTCCTAAACACGCTCTTTCCGCAATTACAGTTTCCATTTCTAGAATTCCAATGGCGAAATCCGTGAGCCCCGACGCCATTTCCACTCTGCTTGCAAATCCAACACCGGATTCCTCCTCTGATCTTCCCGAAATCGTTGTGCAAGTCCTCGATCTCAAGCAAAGTGGCAACAGATACATGTTTAGTGCTAGTGATGGAAAATTGAAGCTGAGGGCGATTTTGCCCTCGAGTCAGTACTCTGATGTGCTCTCTGGCAAGATTCAGAACCTCGGCCTTATTCGAATCCTTGATTACACTCTCAATGATATCCCCAACAAATCTGAAAAGTATCTTATTGTTACCAAATGCGAACCTGTGTCTCCTGCTCTTGAATCAGAGATAAAGAGCGAGGTGAAAAATGAAGGTGGTGGCATTGTTCTGAAGCCGAAGCAAGACAGTGCGGTCAAGATTGAAGGTGGGATTGTGTTGAAGCCAAAGCAGGAAGTGGTGTCAAAATCTGCTGCTCAGATTGTGCATGAACAGCAAAGAAATGTTGCACCTGCTGCGAGAATGGCCATGACACGTAGGGTGCGTCCTCTTGTTTCATTGAACCCTTATCAGGGTAATTGGACTATTAAGGTTAGTGTTACGAGCAAAGGGAACATGCGCACCTATAAGAATGCTCGAGGAGAAGGTTGTGTCTTTAATGTGGAGTTGACAGATGAAGATGGCACACAGATTCAAGCAACCATGTTTAATGATGCTGCAAGGAAGTTCTATGACAAGTTTGTTTTGGGAAAGGTTTACTACGTATCAAAGGGTACTTTGAAAGTTGCTAACAAGCAGTTCAAAACTGTACAAAATGACTATGAAATGACACTGAATGAGAATTCTGAGGTAGAGGAAGCTGCCAATGAAGCAAGTTTTGTTCCTGAAACAAAATTCAGCTTTGTTCCAATTGATCAGTTGGGTCCTTATGTCAACAAATCTGAACTTGTTGATGTTGTTGGAGTTGTTCAGAATGTATCTCCAACTATGAGCATAAGAAGGAAGAGCAACAATGAAACTATTCCAAAGCGTGACATTACTATTGCTGATGAAACGAAGAAGACAGTAGTGGTGTCACTGTGGAATGATCTCGCAACTAACATAGGTCAAGAGTTGCTGGACATGGCTGATAAATCTCCAGTAGTTGCAATTAAGTCTCTTCGGGTTGGGGATTTCCAAGGTGTTTCTTTGTCAGCTATAAGCAAAAGTGTAATTAAGATTGATCCAGAGATACCTGAAGCAAAGAAACTTAGATGCTGGTATGACTCTGAAGGCAAAGATGCTACAATGGCTTCTGTTGGCTCTGGCTCGAGTCCTTCATCCATGAATGGAAGTAGATCTGTGTACTCTGATCGTGTTTCACTTTCTTACATAACTTCGAACCTGTCATTGGGAGAAGACAAGCCTGCATTTTTCAGCCTTAGAGGATACATAAGCTTCATAAAGCCAGATCAAGCAATGTGGTACCGTGCTTGCAAAACTTGCAACAAGAAAGTCACTGAGAGCATTGGTGCTGGGTATTGGTGTGAAGGTTGCCAGAAAAATGATGAACAATGTAGTTTAAGATACATTATGGTTGTAAAAGTTGCTGATGAAAGTGGGGAGGCTTATGTCTCAGTCTTCAATGAAGAAGCTGAGAAGATTGTTGGGTGCTCTGCTGATGAACTAGACACCTTAAAATCTCAGGAGGGAGAAGATAACCCTTTTCAACTGAAACTGAAACAAGCTACTTGGGTTCCTCATCTTTTCCGGGTTAGCGTTTCTCAAAACGAGTATAACAATGAGAAGAGGCAAAGGATCACAGCCAAGACCGTTGTTCCTGTTGACTTTGCTGCTGAGTCAAGACTTCTCTTGGAAGATATATCAAAGATGAGAGCTTCACAATAA 1986 0.424 PTLYKAQNPPFLLLPIPTRSLFLYLPKHALSAITVSISRIPMAKSVSPDAISTLLANPTPDSSSDLPEIVVQVLDLKQSGNRYMFSASDGKLKLRAILPSSQYSDVLSGKIQNLGLIRILDYTLNDIPNKSEKYLIVTKCEPVSPALESEIKSEVKNEGGGIVLKPKQDSAVKIEGGIVLKPKQEVVSKSAAQIVHEQQRNVAPAARMAMTRRVRPLVSLNPYQGNWTIKVSVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNDAARKFYDKFVLGKVYYVSKGTLKVANKQFKTVQNDYEMTLNENSEVEEAANEASFVPETKFSFVPIDQLGPYVNKSELVDVVGVVQNVSPTMSIRRKSNNETIPKRDITIADETKKTVVVSLWNDLATNIGQELLDMADKSPVVAIKSLRVGDFQGVSLSAISKSVIKIDPEIPEAKKLRCWYDSEGKDATMASVGSGSSPSSMNGSRSVYSDRVSLSYITSNLSLGEDKPAFFSLRGYISFIKPDQAMWYRACKTCNKKVTESIGAGYWCEGCQKNDEQCSLRYIMVVKVADESGEAYVSVFNEEAEKIVGCSADELDTLKSQEGEDNPFQLKLKQATWVPHLFRVSVSQNEYNNEKRQRITAKTVVPVDFAAESRLLLEDISKMRASQ* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4101 661 Pfam OB-fold nucleic acid binding domain 227 313 IPR004365 GO:0003676
Amo01g4101 661 SUPERFAMILY Nucleic acid-binding proteins 215 323 IPR012340 -
Amo01g4101 661 SUPERFAMILY Nucleic acid-binding proteins 42 147 IPR012340 -
Amo01g4101 661 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 44 656 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo01g4101 661 CDD RPA1_DBD_A 216 319 - -
Amo01g4101 661 Gene3D - 327 467 IPR012340 -
Amo01g4101 661 Gene3D - 45 154 IPR012340 -
Amo01g4101 661 Gene3D - 213 322 IPR012340 -
Amo01g4101 661 PANTHER REPLICATION FACTOR A 1, RFA1 46 655 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo01g4101 661 Gene3D - 468 657 IPR012340 -
Amo01g4101 661 CDD RPA1_DBD_C 491 656 IPR013955 -
Amo01g4101 661 Pfam Replication factor-A C terminal domain 504 650 IPR013955 -
Amo01g4101 661 Pfam Replication factor-A protein 1, N-terminal domain 46 143 IPR007199 GO:0003677|GO:0005634|GO:0006260
Amo01g4101 661 Pfam Replication protein A OB domain 344 441 IPR031657 -
Amo01g4101 661 SUPERFAMILY Nucleic acid-binding proteins 483 657 IPR012340 -
Amo01g4101 661 SUPERFAMILY Nucleic acid-binding proteins 332 461 IPR012340 -
Amo01g4101 661 CDD RPA1_DBD_B 360 455 - -
Amo01g4101 661 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 46 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4101 Amo-Chr1 115856817 115860173 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g4101 42 661 Core DNA Replication Machinery Family AT5G08020 70.853 0.0 936
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4101 K07466 - qsu:112017680 987.252