Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4093 CTCCCCAACTCTTACGTTACCAACCCTAACCCACTCCAAATCTCCAACGGCCCAGCAGCACACCCTCTCTCATCCCTCCCATCACCCTCGACCCGGACCTATCCTCGTCGTTGTCGCCAGAAGGTTGTCAAGGCCGGACCTGTCATCGTCGTCCTCGAGCCCGAGGTCTTGTTCTCCTCGCCGTCGCAAACGTGCCTGTTCTCCTCACCGTCGTTCCAGTGCCTCCAGAAGCTTCCTTCCTCCAACAACAAGTTCACCTACAACTGCACAACCACACCTTCAACTTCCTCGTCGATAATGGCTTCAGTCGGTTCCTCTCTTTTTCTCTCTGGATCTATGCCAGCTTTGATGTCATCTAGGTTTCTTCTTCTTGTTGGAGAGTCCTTCCCCATTAGAAGAGCATTGGCTACTCATAAAAATGCTTCTTCTTTGTTGCACWCAAGTATTCATTGTATGAGCCAAGTGGAACCACCCAATCATGGTTCCTTAACCCTCTCAAGTGTTGGTTTCCAAGGTGAAGTTGATAAACCAATTAACAAAGGTGGCAAGTCTAGCAGYAAGGTAAAGCCATTGTTGGGTTCATCCCCTGGGTCCCTTAAGAGCAAAGGCATAGGGAAACCTATTGSTTCCAGTGAGAAGAAGAAAGYGTTTGGGATTGTTGAGAGGAAGAAACAACAAATCGAGGCTGCCCCATTTGCAGCAAAATCGTTCTCTGAACTTGGGTTGCCCCTTGTTCTGATTGAGAGACTGGAGAAAGAGGGGTTCAGTGTTCCAACTGAAGTTCAGTCTRCAGCTGTTCCTACCATTCTGCAGAACCATGATGTCATAATTCAGTCTTACACGGGTTCGGGGAAGACATTGGCTTATCTGCTTCCTATACTATCATCTATTGGTCCACTGATGAACAAAGTTTCCAAGAGTGCCAGTGGTGGTGATTCTGGTGGGAAAATGGGAATAGAAGCAGTGGTTGTTGCTCCCTCTAGGGAGCTAGGGATGCAGATAGTGAGGGAGTTTGAGAASATACTAGGAGTGGAGAACAAGAAAGTGGAAGAAGCTCTCAAGAAGAATAAACCTGCCATTGTTGTTGGCACACCTGGTAGGATAGCGGAACTTAGTGCAGCAGGGAAGCTTCGGACACATGGCTGTCGCTATTTGGTATTGGATGAARTTGATGAGCTCTTGTCATTCAATTTTCGGGAGGACATGCACCGGATATTGGAGCATGTAGGCAGGAGATCAGGTGCAGACCTGGATCCAAATGTTAAAAGGACTGAGCGTCAGTTAATTATGGTGTCTGCAACTGTGCCGTTTTCTGTTGTAAGAGCAGCGAGAAGCTGGGGATGTGATCCACTTCTCGTCCAAGCTAAGAAAGTTATCCCGCTTGATACTGTCTCGCCTTCGGGCCCTATCAATTTGTCAAGGCCTTCAGTCGGTTCTACTCCAGACCCAACTAAGCCATCTCAGGCATCAGTAGAGAGTTTGCCTCCGGCTTTGAAACACTATTACTGTGTAGCGAGGTTACAGCATAAGGTCGATACCATGAGAAAGTGTATTCATGCCCTGGATGCAAAAGTTGTAATAGCTTTCATGAACAACACTAAGCAACTAAAGGATGTCGTCTTCAAGCTGGAGGCCCGTGGAATGAAAGCGGCAGAGTTGCATGGGGATCTTGGGAAGCTTGCTAGGTCATCAACTTTGAAGAAATTCAAGAATGGCGAGGTGAGAGTTCTGGTGACAAATGAATTATCAGCTAGAGGTTTGGATGTGGCAGAATGTGATCTTGTGGTTAATCTGGACTTACCTACGGATTCAACTCACTATGCACACCGAGCAGGCCGAACTGGTCGGCTTGGTAGGGATGGTACAGTGCTGACCATATGTGAAGAGTCCGAAGTGTTTATTGTGAAGAAAATGGAGAAGCAGCTTGGAGTAACTGTGGCGTTCTGCGATTTTGTTGAGGGAAAGATGCTTGTCAACCAAGAAGAGAAAGCACTCAGCACTTCAAGAAAATGA 2013 0.4719 LPNSYVTNPNPLQISNGPAAHPLSSLPSPSTRTYPRRCRQKVVKAGPVIVVLEPEVLFSSPSQTCLFSSPSFQCLQKLPSSNNKFTYNCTTTPSTSSSIMASVGSSLFLSGSMPALMSSRFLLLVGESFPIRRALATHKNASSLLHXSIHCMSQVEPPNHGSLTLSSVGFQGEVDKPINKGGKSSSKVKPLLGSSPGSLKSKGIGKPIXSSEKKKXFGIVERKKQQIEAAPFAAKSFSELGLPLVLIERLEKEGFSVPTEVQSXAVPTILQNHDVIIQSYTGSGKTLAYLLPILSSIGPLMNKVSKSASGGDSGGKMGIEAVVVAPSRELGMQIVREFEXILGVENKKVEEALKKNKPAIVVGTPGRIAELSAAGKLRTHGCRYLVLDEXDELLSFNFREDMHRILEHVGRRSGADLDPNVKRTERQLIMVSATVPFSVVRAARSWGCDPLLVQAKKVIPLDTVSPSGPINLSRPSVGSTPDPTKPSQASVESLPPALKHYYCVARLQHKVDTMRKCIHALDAKVVIAFMNNTKQLKDVVFKLEARGMKAAELHGDLGKLARSSTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSTHYAHRAGRTGRLGRDGTVLTICEESEVFIVKKMEKQLGVTVAFCDFVEGKMLVNQEEKALSTSRK* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4093 670 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 118 646 - -
Amo01g4093 670 MobiDBLite consensus disorder prediction 470 491 - -
Amo01g4093 670 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 235 263 IPR014014 GO:0003724
Amo01g4093 670 MobiDBLite consensus disorder prediction 1 33 - -
Amo01g4093 670 MobiDBLite consensus disorder prediction 179 205 - -
Amo01g4093 670 Gene3D - 208 455 IPR027417 -
Amo01g4093 670 Pfam DEAD/DEAH box helicase 259 439 IPR011545 GO:0003676|GO:0005524
Amo01g4093 670 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 266 453 IPR014001 -
Amo01g4093 670 SMART helicmild6 537 618 IPR001650 -
Amo01g4093 670 Gene3D - 495 651 IPR027417 -
Amo01g4093 670 Pfam Helicase conserved C-terminal domain 516 618 IPR001650 -
Amo01g4093 670 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 513 657 IPR001650 -
Amo01g4093 670 CDD SF2_C_DEAD 498 627 - -
Amo01g4093 670 CDD DEADc 246 454 - -
Amo01g4093 670 SMART ultradead3 254 464 IPR014001 -
Amo01g4093 670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 267 630 IPR027417 -
Amo01g4093 670 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 118 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4093 Amo-Chr1 115686301 115692786 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g4093 236 640 Eukaryotic Initiation Factors Gene Family AT3G19760 24.882 7.95e-43 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4093 - - aip:107613119 992.26