Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4077 ATGGCATCGTGTAGTAGAGTGGTTCATGAAAAGGGATGCGGGAATGGTGATGATTCGGATCCGGATGGTGAAATGGCTACAAGGGCGGGCGATGACGAGGAAAAAATGCTTGACATAGGAGTGGAAGAGGATMAGTGTGAGGYTTTAATTTATAAGCAGAGTGAAGGCACTACCAACACGATATCTAATGCAGGAGGGGTTACTGCGGCAGATGTACTTAAGATGGAGTTCAATAGTCCAGCGGAAGCAACTATTTTCTATGAAGAGTATAGTAGGGCAAAGGGATTTGCGATGCGACAAGGGAAGAAGTTGAAAAATAAGAATGGTGATTTTGTTCGTTACACGTATCTGTGTAATAGACAAGGGTTCAGAGACAAGAAGTGGCTAGAGAAGGTGGATCGGAAGAGGGAGCACAAGGTAGTGACTCGTTGCGGGTGTCCTGTGGAGATGCGTATTAAGCCTAAAGGGGATAGTGGGAGATGGATTGTGTCTCTTTTTGTGGAGGAACATAACCATGAGCTGCTGCCTATGAAGTATGTGGACTATCTACCTYCACACCGTAAGATATCTGATGTTGATATTGCACACATGGAGAGCATGAGGCAAGTTGGGATATCAATTCCAASGATCTATGAGTCCATTGCTGCACAGGCGGGAGGTTTTAATTTGGTTCCGTTTACAAAGRGAGATATGGACAATGAGGAAGAGCTTGACTTCCGATCATCGTACGGGACACCGGTCCTTCAAACGCAGTTCCCGGAGTTAGAAAAGTCAGGGGCAATAAACTTCACACGGGAAATATTCTCAAGATATCGTGAGTCACTTAAAAGGTGTGTTCGGGTGACCATATTGGAGTGCATCGAACGTGAGGATAGGTGTGTGTATGTAACACAGAAGTATAGAAGACCGAATTCACGGTGGGATGTGGTTCATATGAAAAGGAAAGAGGAGTTTCTTTGCAYTTGCCTGAGGATGGAGTCATTTGGTTTGCCATGTGTTCACATTCTGGCAGTTTTGGTTAGGTTAGATATTGATTCCCTTCCTAAGAGTCTTGTGTTGGCGCGGTGGTCCAAAGCCGCGAAGGAAGATCTTTGCTACGAACCGTTAAGCAGCCGATATAGTGATGCGGGTGTTTTGTATCGGAGTAGAATGGGTGCATTCCTCCAGCACTGCAAGCGGTTAGCAAAAGTAGCATGTGCAGTTGCTGGGAATGGAGCTGGCAACAGTGGGGGAGGGGTTAGGGATCCTATTAGTGTCAGGACGAAAGGCACAGGACGTGGTAATGAACCTCTTGGGTCTAGGGGTATCAAGCGGCGTAAGTGCAGCACATGCGGTTGTGTTGGTCATCGAAGGACCCGCTGTCCCAATGCTCCACCGACATCAGCACCCTCAACCCAGGGCGAGGGTGCAAACATCGGTTTCGATGCATTAATTGGTGGGTATTCGGAAGTGCTCATTCAGCATGGGTTGCTAATGGTGCAAGTATGTGTTATTGGTCATGCTGATGTGTTGGAATGTATGTGGATTGAAGTGTGTTGA 1539 0.4672 MASCSRVVHEKGCGNGDDSDPDGEMATRAGDDEEKMLDIGVEEDXCEXLIYKQSEGTTNTISNAGGVTAADVLKMEFNSPAEATIFYEEYSRAKGFAMRQGKKLKNKNGDFVRYTYLCNRQGFRDKKWLEKVDRKREHKVVTRCGCPVEMRIKPKGDSGRWIVSLFVEEHNHELLPMKYVDYLPXHRKISDVDIAHMESMRQVGISIPXIYESIAAQAGGFNLVPFTKXDMDNEEELDFRSSYGTPVLQTQFPELEKSGAINFTREIFSRYRESLKRCVRVTILECIEREDRCVYVTQKYRRPNSRWDVVHMKRKEEFLCXCLRMESFGLPCVHILAVLVRLDIDSLPKSLVLARWSKAAKEDLCYEPLSSRYSDAGVLYRSRMGAFLQHCKRLAKVACAVAGNGAGNSGGGVRDPISVRTKGTGRGNEPLGSRGIKRRKCSTCGCVGHRRTRCPNAPPTSAPSTQGEGANIGFDALIGGYSEVLIQHGLLMVQVCVIGHADVLECMWIEVC* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4077 512 MobiDBLite consensus disorder prediction 11 34 - -
Amo01g4077 512 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 62 191 - -
Amo01g4077 512 Pfam FAR1 DNA-binding domain 86 176 IPR004330 -
Amo01g4077 512 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 234 367 - -
Amo01g4077 512 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 62 191 IPR031052 GO:0006355
Amo01g4077 512 MobiDBLite consensus disorder prediction 10 34 - -
Amo01g4077 512 ProSiteProfiles Zinc finger SWIM-type profile. 308 343 IPR007527 GO:0008270
Amo01g4077 512 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 234 367 IPR031052 GO:0006355
Amo01g4077 512 MobiDBLite consensus disorder prediction 412 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4077 Amo-Chr1 115463678 115466482 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo01g4077 FAR1 2.4e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4077 - - adu:107485726 483.796