Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4075 ATGGAATCTTCTTGGGATTATGTTACTGAAGAAGAAAAGGGGTATGTCTCCAACGATGCACTTTCTGCTGCACCTCCTCCTCCTCCTAGTACCCTTTTGAGAAGCAAAAGTTCCTTCCTTGGATGGGAACTGAAAACCCCATGTTCTAGCTTTGACAATCAATGTTTTGAAGAACTTGGTTTCCCTGAACTGTTGGGGAAACCATTGTTTAATGATCTAATTGGAGGTAGTGGACATGGTGGAAGAATCACAAGTAGTAGTAATAGTACTATTACAACTACTACTACTGTTGTGGACTCCAGTAGTGGCCGTGATTCCCTCATTGATTTGAAGCTTGGAAGATTTGCTGATCATGCTGATGTTAATGTTGCATCATTTTCCAAAGGAGCACCTGTTTTGTGTTCTTCTGTGTCGTCCACGGCCCCGAAGAGACCGCGAGGCTCTTTGGGTTTGCACTCGCAGACTMCTTACTGCCAAGTCTATGGCTGTAACAAGGATCTCAGCTCCTCTAAAGATTACCACAAGAGACACAAAGTTTGTGAGGTTCATTCCAAGACTGCCGTAGTTATAGTCAATGGCATTGAGCAAAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTCGATGATGGTAAACGCAGCTGTCGCAAACGCCTTGCAGGACACAATGAGCGGCGAAGAAAACCACAAGCAGATAGCAGATTCCAGGGAACCATGCTATCGTCGGCATCTTTCATCTCCTCGGATTCAGATAAATACGGAATGAGTAGCTTCTGGAAACCCGGTAAAGCAGAACACGGGTCCGATTTTTGGCATCCTGAGTCAAGATCTCTTTTCCCTTCATACAATGGAAAACAATTTCCCTTTCTTCATGAGAGTGGTGCTACATCCACTACTACCGAAAGCATCTTCTATGAAAACAATAACCAATATAAGCATGTCATTGCGGCCCAACATCCAGGGTCAAGACCACTATTTCAGAACAGCTCCTTAGGAAGTGACGACTTCAATCTTTTCGATACATCATCAACTGTTCAAGGATTGTCGGGAATTTCGGACTCGTGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAAGCCAGTCGTCCGGAATTCCCTTTGTTCCCCCCATGATTAGTCCAAGCAGCCACAGCCATCCTTGCAGCATAAGTCAAGTCTCTGAAAAGATAGGAATGAGCTCGCAAACTTCTTCGTGCCGAGTGTACGATAGGTTTCCATCGGCATTGAATCCTGCAAGTGGAAGCCAGCTTAGTCCTATACTTATATCAGACAATAACAATATTGTCAACTTCGAAATGGCAGACCGGATTTTCCAAGGTTCAGACTTTGTTAATGCTAGAGATCGTCTTTCATGTGAAGATGTTGCAACAATTGACTTGCTACAGCTGTCGTCGCAGCTTCAACGAGTCGAGCATCAAAGGCAGTCCTTGCAGGTTAAGCAAGAAAATGATTCTTCCTGCACTCTCCGGATTACTTAA 1518 0.4427 MESSWDYVTEEEKGYVSNDALSAAPPPPPSTLLRSKSSFLGWELKTPCSSFDNQCFEELGFPELLGKPLFNDLIGGSGHGGRITSSSNSTITTTTTVVDSSSGRDSLIDLKLGRFADHADVNVASFSKGAPVLCSSVSSTAPKRPRGSLGLHSQTXYCQVYGCNKDLSSSKDYHKRHKVCEVHSKTAVVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQADSRFQGTMLSSASFISSDSDKYGMSSFWKPGKAEHGSDFWHPESRSLFPSYNGKQFPFLHESGATSTTTESIFYENNNQYKHVIAAQHPGSRPLFQNSSLGSDDFNLFDTSSTVQGLSGISDSCCALSLLSSQSQNSSSQSSGIPFVPPMISPSSHSHPCSISQVSEKIGMSSQTSSCRVYDRFPSALNPASGSQLSPILISDNNNIVNFEMADRIFQGSDFVNARDRLSCEDVATIDLLQLSSQLQRVEHQRQSLQVKQENDSSCTLRIT* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4075 505 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 39 505 IPR044817 GO:0003677
Amo01g4075 505 ProSiteProfiles Zinc finger SBP-type profile. 155 232 IPR004333 GO:0003677
Amo01g4075 505 PANTHER 1 PROTEIN, PUTATIVE-RELATED 39 505 - -
Amo01g4075 505 Pfam SBP domain 158 231 IPR004333 GO:0003677
Amo01g4075 505 Gene3D - 150 219 IPR036893 GO:0003677|GO:0005634
Amo01g4075 505 SUPERFAMILY SBT domain 156 236 IPR036893 GO:0003677|GO:0005634
Amo01g4075 505 Coils Coil 473 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4075 Amo-Chr1 115441127 115444468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g4075 108 232 SBP-box Gene Family AT1G69170 63.200 4.06e-46 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Amo01g4075 SBP 5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4075 - - adu:107468861 894.419