Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4073 ATGGGAAGGGGTAAGGTTGAGTTGAAGAGGATAGAGAACAAGATCAATAGGCAAGTTACATTTGCAAAGAGGAGAAATGGTTTGCTCAAGAAGGCTTATGAACTCTCAGTTCTTTGTGATGCCGAAGTTGCCCTCATCATCTTCTCTAATCGCGGCAAACTCTACGAGTTTAGCAGCACTTCTAGCATGATGAGAACTCTGGAGAAGTATCACAAGTATAGTTACAGTGCTCTCGAGTCTGGTCGACCAATCAGTGACACGCAGACAAATTACGAGGATTATAAGAGACTAAAAGACAATGTAGAAGCTCTCCAACGTTCTCAGAGGAACCTACTGGGGGAAGATCTTGCTCAAATGAATACAACTGAGCTGGACCAGCTTGAGAATCAACTTGAGGTAGCACTCAAGAATATTAGGTCAACTAAGACTCAGTTTATGCTTGACCAACTTGCTGATCTTCAGAACCGGGAAATGGCGCTTGTTGAAACAAATAATGTGCTAAGGAGTAAGATGAAACAGTTAGAAGAACTGAATAATCACTCATCAGAAGTGGCTTTGGAAGACGTGGGCCCCACCATTCACTACAACCGCTTTCCTTCTCAATCAGATCACCCATTTTTCCAACCTGTTCTAGGAGTTAATTCCAACTTGCAAATTGGATACAATCAAAGCATTCATCATGATGTGAACGTTGGAGCTTCATCCTTAACTATGCAGGGATTCGTCTCTGGGTGGATGCTTTGA 744 0.4261 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSSMMRTLEKYHKYSYSALESGRPISDTQTNYEDYKRLKDNVEALQRSQRNLLGEDLAQMNTTELDQLENQLEVALKNIRSTKTQFMLDQLADLQNREMALVETNNVLRSKMKQLEELNNHSSEVALEDVGPTIHYNRFPSQSDHPFFQPVLGVNSNLQIGYNQSIHHDVNVGASSLTMQGFVSGWML* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4073 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Amo01g4073 247 Coils Coil 117 144 - -
Amo01g4073 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 229 - -
Amo01g4073 247 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Amo01g4073 247 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Amo01g4073 247 Coils Coil 84 114 - -
Amo01g4073 247 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 229 - -
Amo01g4073 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Amo01g4073 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Amo01g4073 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Amo01g4073 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Amo01g4073 247 Coils Coil 160 180 - -
Amo01g4073 247 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Amo01g4073 247 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo01g4073 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Amo01g4073 247 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo01g4073 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4073 Amo-Chr1 115382996 115390712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g4073 1 247 MADS-box Gene Family AT5G15800 51.136 2.75e-80 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo01g4073 K-box 2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4073 K09264 - gmx:100804810 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g4073 01 115382996 115390712 Amo11g2423 11 128845643 128851769 hybridization
Amo01g4073 01 115382996 115390712 Amo10g2556 10 88247581 88255981 PCT
Amo10g2556 10 88247581 88255981 Amo01g4073 01 115382996 115390712 PCT