Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4068 ATGATGGAGCTTCCTCAAGCGCGGTCATTTGGAACCGAAGGAAGAAAACCTACGCATGACTTTCTGTCACTCTACAGTAATTCAACTTCCCAACAAGATCCACGACCACCTTCTCAAGGAAGCTACCTCAAGACCCATGATTTCTTGCGAGTAGAAACGAAAGCCAATACAAAGGAAGAAGCCTCGGACGAGACATCATCGACGGTTCAAAAGCTACCACCTGCAGCACCACAACCTCCTCCTTCTGTTGAGAACCACCAGCACCTCTTGCCTGGAGGGATTGGAACTTACAGTATTAGCCACATTTCTTATTTTAATAATAATAATAATATAATAATAATAATCAAAGGCACGGATAGAAACGATGAAAACTCCAACTGCAGTTCTTATACCTCAAGTGGTTTCACTCTATGGGATGAGTCTGCAGTTAAGAAGGGAAAGACAGGGAAGGAGAATAATATTGTGGGCGACAAGCTTATTCCCGGAGAGACACAGTCTGCCAAGCAAGGGCATTGGACGTCCACGGAGGGAACGCCACAGTCCTTTTCTAACAATCGTCACAACAGCTTCAACTCTCGCTCTTCCTCTCAGACAACGGGACAGAGGAATCAGAGTTTCATAGAAATGATGAAGTCAGCAAAAGATTGTGCCCAAGATGAAGAGCTAGACAATGAAGAAACATACTTTCTTAAGAAAGAGTCCTCGAATCCTGAAAGAGCAGAACTCAGGGTGAAAGTTGATGGAAAGAGTAGTGATCAAAAGCCAAACACACCAAGGTCAAAACATTCAGCAACAGAACAGCGGAGGAGGAGCAAAATTAATGACAGGCGAGTATTACCTATCTTGCATAAGATATTCCAGATGCTACGAGAGTTAATTCCACACAGTGACCAAAAGAGAGACAAAGCATCTTTTTTGCTCGAGGTCATTGAGTATATTCATTTCTTACAAGAGAAGGTGCATAAGTATGAAGGTTCATTCCAAGGATGGAACCACGAGCCAGAAAAACTGATGCCATGGAGGAATAATGACAAGCCAGCAGAGAGTTTTGAAGCTTGTGGCACAAATAGCGGGTCAGGTCCATCACCAACCTTGCTCTTTGCTTCAAAGATCGATGAGAAAAATATCACTCTCTCCCCACCAATTACTGGTAGTTCTCAGAAACTAGAACCTGGCTTGAACACAGCAACTCCCTTCAAGAACATGGATCATCCTCCTGGAATAACAAACAACACTTTCCCAATTCCTATTTCTTCACCGCCAAACTTCTTCCCTCCTAGAAAAAGCATTGGTCTAGGCGAAATGCCTCACGTCACACATAGACTTCCATCTGATGCAGGGAATGGCATATACCAACCTTCAGTGGAGTGTCAGACTGTGACTGCTACTAATGAAAAGTTGAAAGAGAAAGAGCTCGCTATTGAAGGTGGTGCCATTAGCATATCAAGTGTATACTCAAAAGGGTTGTTGGATACACTTACACATGCACTACAGAGTTCGGGAGTGGATTTGTCACAGGCTAGCATCTCAGTGCAAATTGAGCTTCGTAAGCAAGAAAACATTATCAGACCAACTCTGCCAATGTCAATGTGTGGCATTAAGGGCGATGAAGTTCCTTCTAACAATCAAAGGATGATGCGCTCTAGAGTTGCTACCTCTGGGAAATCTGACCAACCAGTAAAGAAGCTAAAGTCTTGCAAAACCTAA 1707 0.4341 MMELPQARSFGTEGRKPTHDFLSLYSNSTSQQDPRPPSQGSYLKTHDFLRVETKANTKEEASDETSSTVQKLPPAAPQPPPSVENHQHLLPGGIGTYSISHISYFNNNNNIIIIIKGTDRNDENSNCSSYTSSGFTLWDESAVKKGKTGKENNIVGDKLIPGETQSAKQGHWTSTEGTPQSFSNNRHNSFNSRSSSQTTGQRNQSFIEMMKSAKDCAQDEELDNEETYFLKKESSNPERAELRVKVDGKSSDQKPNTPRSKHSATEQRRRSKINDRRVLPILHKIFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQGWNHEPEKLMPWRNNDKPAESFEACGTNSGSGPSPTLLFASKIDEKNITLSPPITGSSQKLEPGLNTATPFKNMDHPPGITNNTFPIPISSPPNFFPPRKSIGLGEMPHVTHRLPSDAGNGIYQPSVECQTVTATNEKLKEKELAIEGGAISISSVYSKGLLDTLTHALQSSGVDLSQASISVQIELRKQENIIRPTLPMSMCGIKGDEVPSNNQRMMRSRVATSGKSDQPVKKLKSCKT* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4068 568 MobiDBLite consensus disorder prediction 47 65 - -
Amo01g4068 568 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 266 316 IPR011598 GO:0046983
Amo01g4068 568 MobiDBLite consensus disorder prediction 536 568 - -
Amo01g4068 568 MobiDBLite consensus disorder prediction 541 559 - -
Amo01g4068 568 Gene3D - 254 337 IPR036638 GO:0046983
Amo01g4068 568 Pfam Helix-loop-helix DNA-binding domain 259 317 IPR011598 GO:0046983
Amo01g4068 568 MobiDBLite consensus disorder prediction 1 87 - -
Amo01g4068 568 MobiDBLite consensus disorder prediction 21 39 - -
Amo01g4068 568 CDD bHLH_AtBIM_like 256 341 - -
Amo01g4068 568 PANTHER TRANSCRIPTION FACTOR BIM1 2 565 - -
Amo01g4068 568 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 2 565 IPR044295 GO:0003700|GO:0006351|GO:0046983
Amo01g4068 568 MobiDBLite consensus disorder prediction 228 274 - -
Amo01g4068 568 MobiDBLite consensus disorder prediction 166 202 - -
Amo01g4068 568 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 255 338 IPR036638 GO:0046983
Amo01g4068 568 SMART finulus 263 322 IPR011598 GO:0046983
Amo01g4068 568 MobiDBLite consensus disorder prediction 146 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4068 Amo-Chr1 115094412 115101832 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g4068 2 518 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 45.872 8.33e-111 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo01g4068 HLH 3.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4068 - - adu:107468970 1040.41