Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4067 ATGTCAGGCGGAATGAGCGACGGCGACGGAGAATCAAAGTCCTCCCCAAACAAACGCCTCAAAACCGAAGAAGCATCGGAGAAGGTCGACGGTGGCGGAGTCGATGATAACCAGGGTGTATGGTGCGGGATCTGCTACGCGGAGCGCGGCGCACCGGTCGCCGGAGAAATCGACTGCTGCAGCCATTACTTTTGCTTCGCATGCATCATGGAGTGGTCCAAGCACGAGTCCCGATGCCCGATCTGCCGCCGGAGATTCTCCAACGTTCGCAGGCTCCCCAAGCATGGCATCTTCTCTTCTTCTCGGGACATTAAGGTCCCTCTCCGTGATCAGGTTTATCATCCTTATGGGAATATGAGCACCGGTCCTACTCACTCTCATACTGAGGCCAACTGCGTTGTCTGTCATGGTGTGGCAGATGAACATCTTCTGCTAATTTGTGATCTTTGCGATGCTTCTTCTCATACCTACTGTGTTGGCCTTGGCTACACTGTCCCTGAAGGCGATTGGTTTTGTTATGACTGTGCTATTGCCAGGGAGACCAATGAGCAGGAAGACTTAGAGCTACAAAATGTCGAGCAAAGTGGGGCGATAAGTGCAATACCATGTCCTTTACAACAAAGCCAATCCCCTCCTCCTCCTAGTATTCCATCAGCTGATAGGTTAAGTAGATACAGGGGAAAGAGGCCTCTGTCAAATGCCCAGCAGGTGCAGCGTAACATACAAGCGCTCCGTGATAATTGGAATGCACTGAGAAGTGGTTCCATGAAGTTCGGTTCTGGTTCCATTCAAACCAGTGGCATAGGTGGTTGTCATAATCGAGATTCTGGTTCTGCTTCATGTGGCAGACCCGACAAACAGCATTCTAATTCTATGGGTTTGGGAAGCCTAGGTTCCAGTTCTGGTTCTGTTTCACGCAGCAGATCAGATGAACAYCATTCTAATTCTATGGTTTTGGCAAACAGGTGTTCTGGTTCCGTTTTGCATGGCAGATCAGACGAACAGCATTCTAATTCTATGGCTTTGGCAAACCGAGGATCTGGTTCCATTTTGCGTGGTGGACCACACGAACAGCATTTTGATTGTATGGCTTCGCCAAGAATTCAGCACTCGAGTGTCCAAGATGGTTCATCTAGAGGCATAATGAATGAGAGGGGGATGAAAGATGTTGAGAAGGCTTGGAAAATGATGGAGAAGGCAAAGAAGATGCAAGGGACTCGTCAAAGAACCAACAGAAAATAG 1242 0.4911 MSGGMSDGDGESKSSPNKRLKTEEASEKVDGGGVDDNQGVWCGICYAERGAPVAGEIDCCSHYFCFACIMEWSKHESRCPICRRRFSNVRRLPKHGIFSSSRDIKVPLRDQVYHPYGNMSTGPTHSHTEANCVVCHGVADEHLLLICDLCDASSHTYCVGLGYTVPEGDWFCYDCAIARETNEQEDLELQNVEQSGAISAIPCPLQQSQSPPPPSIPSADRLSRYRGKRPLSNAQQVQRNIQALRDNWNALRSGSMKFGSGSIQTSGIGGCHNRDSGSASCGRPDKQHSNSMGLGSLGSSSGSVSRSRSDEHHSNSMVLANRCSGSVLHGRSDEQHSNSMALANRGSGSILRGGPHEQHFDCMASPRIQHSSVQDGSSRGIMNERGMKDVEKAWKMMEKAKKMQGTRQRTNRK* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4067 413 SMART PHD_3 131 176 IPR001965 -
Amo01g4067 413 ProSiteProfiles Zinc finger PHD-type profile. 129 178 IPR019787 -
Amo01g4067 413 PANTHER HISTONE ACETYLTRANSFERASE 9 193 - -
Amo01g4067 413 MobiDBLite consensus disorder prediction 280 305 - -
Amo01g4067 413 Pfam Ring finger domain 42 83 IPR001841 -
Amo01g4067 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 104 IPR013083 -
Amo01g4067 413 PANTHER PHD-FINGER FAMILY PROTEIN 9 193 - -
Amo01g4067 413 SMART ring_2 42 82 IPR001841 -
Amo01g4067 413 MobiDBLite consensus disorder prediction 12 31 - -
Amo01g4067 413 MobiDBLite consensus disorder prediction 203 222 - -
Amo01g4067 413 SUPERFAMILY FYVE/PHD zinc finger 124 177 IPR011011 -
Amo01g4067 413 Pfam PHD-finger 132 176 IPR019787 -
Amo01g4067 413 PANTHER PHD-FINGER FAMILY PROTEIN 326 406 - -
Amo01g4067 413 ProSitePatterns Zinc finger RING-type signature. 60 69 IPR017907 -
Amo01g4067 413 SUPERFAMILY RING/U-box 36 95 - -
Amo01g4067 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 202 IPR013083 -
Amo01g4067 413 MobiDBLite consensus disorder prediction 265 319 - -
Amo01g4067 413 MobiDBLite consensus disorder prediction 1 32 - -
Amo01g4067 413 ProSiteProfiles Zinc finger RING-type profile. 42 83 IPR001841 -
Amo01g4067 413 PANTHER HISTONE ACETYLTRANSFERASE 326 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4067 Amo-Chr1 115035380 115037651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g4067 101 188 C2H2 Transcription Factor Family AT3G01460 34.831 2.20e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo01g4067 PHD 4.4e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4067 - - ahf:112709160 786.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g4067 01 115035380 115037651 Amo11g2433 11 129234635 129236510 hybridization