Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4063 ATGGCAGATGTAACGTACCTTCTCCACCATCACCACCCTGAACACGACGACGACCCTCACCAAACGCTAACCCTACCACCCTACTGGTCTCCTCACGATTTCGATTTCTACGCCTCCGATCCCGAATTCCCCCAACAACCGCATAACAACCACCACCACCACCACCACCACCATCGCCACCACCACTTTCCCCAATCTGGTTCGTCCTCCATTCTCGACCGAGAGAATCAGGTCAATTTCGTTATGGATTTATTCCAGCAGCGTGTTGAGCAGTCACAGGTCATGGGACACCCTTTAAACGACGCCGTTTTCGGGAGCAGCGATTTTGGGATTGAAATGGACGCTTTTACCCTTGATTTAGGGTTCCCTTCTGACAGGGACTCCCACCACCGCGCCAATGCCGCTGGAGGGGATTCTTCCGCCGGTGGTGTCGTTGTCGTCGACGATGACGATTTCTTCTTCGGGAGGAGGGTTTCGGGGTCCGAATCCGGCGACGCGGCGGCGTTCGAGAACTGCGTGAGCCTCCTAGGGTTCGGATCGGACTCCGACGAGGAAGAAGACAACGGCGTTCTCCGAATCTGCGTGCATTCCGACGAYGAMTACAKTTTGCACGACGAAAACGACGACGTTTCGAGTATTCCTCTGTGCTGGGACTCGCTGCAGTTGGAAGATAACAGAGAGAACAACGACGATTTRGAGTGGGAGGAGGTTGATGGAAGGGTCGACGAGAGGGAAGTTCTAAGCATGCTCACCGTCGAAGACGATAGATCCGGCTCGGTGTCCGTTTCGCCGATCACCGGAATCGAAGSAGCCGAAGAAGAAGAGGTTAACGTTTTTAGGGTTGGAGGAATGGAGAATTTGGAATGGGAAGTGCTTCTGAATGCAAACAATTTGGACACAATCACGAGCCCGGATTTGGATCACGATTCCGAACCCTATTTTGGTGATCACGATGATTATATTTACACTGCAGAGTATGAAATGATGTTTGGCCAATTCGCCGATAATGATAATCCATTGAACGGTAGGCCTCCGGCTTCGGCTTCCGTCGTCCGGAGCCTGCCGTCAGTGGTGGTAACAAAGGATGACGTGGAAGGGAACAATGCGCTCTGTGCTGTTTGCAAGGATGAGTTTTGTGTTGGGGAGAGTGTAAAGGTGTTGCCTTGTTCCCATCGTTATCATGGTGACTGCATTCTGCCATGGTTGGGGATTAGGAACACTTGCCCCGTCTGCCGCCATGAGTTCCCCACTGATGATGCTGATTATGAACGTAGGAGGCTGCACAGATCTGGCCAGAGGATTTGA 1305 0.5226 MADVTYLLHHHHPEHDDDPHQTLTLPPYWSPHDFDFYASDPEFPQQPHNNHHHHHHHHRHHHFPQSGSSSILDRENQVNFVMDLFQQRVEQSQVMGHPLNDAVFGSSDFGIEMDAFTLDLGFPSDRDSHHRANAAGGDSSAGGVVVVDDDDFFFGRRVSGSESGDAAAFENCVSLLGFGSDSDEEEDNGVLRICVHSDDXYXLHDENDDVSSIPLCWDSLQLEDNRENNDDLEWEEVDGRVDEREVLSMLTVEDDRSGSVSVSPITGIEXAEEEEVNVFRVGGMENLEWEVLLNANNLDTITSPDLDHDSEPYFGDHDDYIYTAEYEMMFGQFADNDNPLNGRPPASASVVRSLPSVVVTKDDVEGNNALCAVCKDEFCVGESVKVLPCSHRYHGDCILPWLGIRNTCPVCRHEFPTDDADYERRRLHRSGQRI* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4063 434 MobiDBLite consensus disorder prediction 1 24 - -
Amo01g4063 434 PANTHER - 72 427 - -
Amo01g4063 434 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 72 427 - -
Amo01g4063 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 332 418 IPR013083 -
Amo01g4063 434 SMART ring_2 371 411 IPR001841 -
Amo01g4063 434 SUPERFAMILY RING/U-box 354 418 - -
Amo01g4063 434 ProSiteProfiles Zinc finger RING-type profile. 371 412 IPR001841 -
Amo01g4063 434 MobiDBLite consensus disorder prediction 1 21 - -
Amo01g4063 434 MobiDBLite consensus disorder prediction 39 70 - -
Amo01g4063 434 MobiDBLite consensus disorder prediction 49 64 - -
Amo01g4063 434 CDD RING-H2_RNF126_like 371 412 - -
Amo01g4063 434 Pfam Ring finger domain 371 412 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4063 Amo-Chr1 114990531 114992173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g4063 72 418 C3H Transcription Factor Family AT5G60820 39.945 1.12e-58 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4063 - - adu:107469048 817.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g4063 01 114990531 114992173 Amo11g2434 11 129279892 129281611 hybridization