Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4058 ATGGGGTGTTCATTTTCTGGTTTGAACGCACTTTACGATTCCGTTAACGGAGGCGGAGATGTTTGGATCAACGAGAACCGGTTCCGTATCGTCAGGCAGCTCGGTGAAGGTGGAAACGCCTATGTCTTCCTCGTCAAGGACGTTCCCGCCGACAACGTCTCCGGCGGTTTCTCCTCCAAGCTCAAACAGTCCTCTCACATTTCCGAGGACGGAACATATGCTATGAAAAAGGTCCTCATCAAGAGCAATGAGCAGCTGGAGTTGGTCAGGGAGGAGATCCYTGTTMCKTCACTGTTCAACCACCCAAATCTGCSCCCGCTTCTCGATCATGCAATCATTTCTGTCAAGCCTACTCCACAAAAATCTTGGAACCACGAGGCATACTTGTTATTTCCACTTCATTTGGATGGAACACTGCTAGATAATACCAAGACAATGCAAGCCAGGAAGGAATCCTTTCCTACCTCGGATGTTCTTCAAATCTTTCGACAGCTTTGTGCAGGACTCAAGCATATGCATGGTTTAGATACTCCATATGCTCATAATGATGTCAAACCTGGTAATGTTCTCATAACACATAGAAAAGGACAARCGCCTCTTGCCATACTCATGGATTTTGGCAGTGCTCGTCCTGCCAGGAAGCACATTGGTTCCAGATCAGAGGCACTCCAGTTGCAGGAATGGGCAGCTGAACACTGTTCTGCCCCTTTCCAAGCTCCGGAGCTGTGGGAATGCCCAAGCCAAGGTGATATAGATGAGAGGACTGACGTTTGGTCACTAGGATGCACATTATATGCAATAATGTATGGGGTATCTCCATTTGAATATGCACTTGATGAGCCTGATGGAGACCTCCGATCAGCTGTTTTAAATGCTAAAATCAAATGGCCAACTGAACGTAAGTCTCAATATCCAGACGCTCTTCATCAGTTTGTATCYTGGATGCTTCAGCCCCAGATTGCTGTGCGGCCCCGGATAGATGATATTGTTATTCATGTTGATAAGTTGATTGCAAAGTTCTCTGGTTGA 1029 0.4645 MGCSFSGLNALYDSVNGGGDVWINENRFRIVRQLGEGGNAYVFLVKDVPADNVSGGFSSKLKQSSHISEDGTYAMKKVLIKSNEQLELVREEIXVXSLFNHPNLXPLLDHAIISVKPTPQKSWNHEAYLLFPLHLDGTLLDNTKTMQARKESFPTSDVLQIFRQLCAGLKHMHGLDTPYAHNDVKPGNVLITHRKGQXPLAILMDFGSARPARKHIGSRSEALQLQEWAAEHCSAPFQAPELWECPSQGDIDERTDVWSLGCTLYAIMYGVSPFEYALDEPDGDLRSAVLNAKIKWPTERKSQYPDALHQFVSWMLQPQIAVRPRIDDIVIHVDKLIAKFSG* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4058 342 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 1 341 - -
Amo01g4058 342 Gene3D Transferase(Phosphotransferase) domain 1 135 340 - -
Amo01g4058 342 SMART serkin_6 28 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g4058 342 Gene3D Phosphorylase Kinase; domain 1 13 132 - -
Amo01g4058 342 SUPERFAMILY Protein kinase-like (PK-like) 21 332 IPR011009 -
Amo01g4058 342 PANTHER - 1 341 - -
Amo01g4058 342 ProSiteProfiles Protein kinase domain profile. 28 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g4058 342 Pfam Protein kinase domain 56 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g4058 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4058 Amo-Chr1 114928440 114932821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g4058 23 332 MAP Kinase Kinase Kinase Kinase AT4G24100 22.397 3.11e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Amo01g4058 Pkinase 1.1e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4058 K08856 - gmx:100803659 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g4058 01 114928440 114932821 Amo11g2444 11 129626388 129628281 hybridization