Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4054 ATGGCCCAAGACCCAGCTTCTGGTGCTGATTCGCCTCGTACGAGGCGTTATGGCCTACTACGGGACCAAGTTCAACTGGTTAAAAGAAAGGATTGTGATCGCTATGAAATTGTTCCAATCCAGGATTCCTTGTCGTTTGAGAAAGGATTTTTCATCGTGATTCGTGCATGCCAGTTGTTGGCTCAAAAGAATGATGGGATCATATTAGTAGGACTTGCAGGTCCCTCTGGAGCAGGCAAAACTGTTTTCACTGAGAAGGTCAACAATTTTATGCCAAGCTTAGCCGTCATCACAATGGACAATTATAACGATTCTAGTCGAATCATAGATGGCAATTTTGATGACCCTCGTTTGACGGATTATGATACTTTGCTTGAAAATATAATGGGTCTTAAAGAAGGGAAAGCAGTACAGGTTCCAATATATGATTTCAAGACTAGTTCTCGCGTAGGTTACAGGACTGTTGAAGTCCCTAGTTCCCGCATTGTCATCATAGAAGGCATTTATGCCTTAAGTGAAAAATTACGGCCTTTGCTTGATCTTCGAGTTTCGGTCACTGGGGGAGTTCACTTTGACCTTGTCAAGCGTGTGCTGCGTGACATTCAACGTGCTGGTCAAGAGCCTGAAGAAATCATTCATCAAATCTCTGAAACGGTTTATCCTATGTATAAAGCTTTTATTGAGCCTGATCTTCAAACAGCACATATAAAAATTATTAACAAGTTTAATCCGTTCTCTGGATTCCAGAATCCCACCTACATATTGAAGTCACTAAAAGCTGTGACAGAGGATCAAATCAAGTCAGTTATTGCTGCTGAGCATACTGAGACGAGAGAGGAAACATATGACATATATCTTCTACCACCAGGGGAAGACCCTGAAGCATGTCAATCATACCTGAGGATGAGAAACCGCGATGGGAAGTATAATCTCATGTTTGAGGAATGGGTCACAGATATTCCATTCATAATATCACCCAGAATAACATTTGAGGTCAGCGTGCGCCTTCTAGGAGGGTTGATGGCATTGGGTTACACAATTGCAGCTATACTAAAACGAAGCAGCCATGTCTTTTCCGATGATAAGGTGACTGTAAAAACTGATTGGCTCGAACAAGTTAACCGCCTATATGTTCAGGTTCAAGGGAAAGATAGAAACTATGTTAAACTTGTTGCAGAGAAACTGGGATTGGATGGTTCATATGTTCCTCGCACTTACATAGAACAAATTCAGCTAGAAAAGCTTGTTAATGATGTAATGGCACTGCCAGAGGATCTTAAGACAAAGCTCAGCATTGATGATGATATGGTTTCAAGCCCTAAAGAAGCCCTTTCTCGAGCTTCTGCTGATAGGAGAATGAAGTATCTAAATCGTGGTATTTCTCACTCATTTTCAACTCAGAGAGAGAAGCATCTATCTAAGTTGACTAGACTAGCTATAAATAACAGAAGATTTGATGGGAGAGCTCTTGAATCACCTGCGCCAGTTGCCAACCAAGGAGTCATCACTCAGCTTTCTGAACAAATATCCACATTAACTGAAAGAATGGATGAGTTCACGAATCGTATTGAGGAGCTAAATTCAAAGTTTGCATCCAGAAAAGCCAGTCAACAGAACATAGCCTTGCCTGCTGAAGCCTGCAATGGCTCAGGTCACACTTCTCTTTTTGTAACTGGATTGGGAAATGGTTCATTGACAAGATCATTGCTGCCTCATTCTTCATCGTCTTCCCAATTAGCTAGGGATGCTCCCCTGATGGAAGAGGTTCTGCTTGTTGCACGAGGACAGCGGCAAATTATACATCAACTAGACTCTCTAAGTACTCTGTTGCACGAATACTGCGGTGAAAGGTCGCGACAGGGAAGGACAGACCAGATAAATAGAATGCACGAAGTGGAAACCATTGCCATCCCCCTGGTTCTGACTTTGGCCATTGGTGCTGTTGGTGTCTTCTTGTTCAGGGGTTTCACATCCCAAAAATAA 1983 0.4236 MAQDPASGADSPRTRRYGLLRDQVQLVKRKDCDRYEIVPIQDSLSFEKGFFIVIRACQLLAQKNDGIILVGLAGPSGAGKTVFTEKVNNFMPSLAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIMGLKEGKAVQVPIYDFKTSSRVGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFSGFQNPTYILKSLKAVTEDQIKSVIAAEHTETREETYDIYLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDIPFIISPRITFEVSVRLLGGLMALGYTIAAILKRSSHVFSDDKVTVKTDWLEQVNRLYVQVQGKDRNYVKLVAEKLGLDGSYVPRTYIEQIQLEKLVNDVMALPEDLKTKLSIDDDMVSSPKEALSRASADRRMKYLNRGISHSFSTQREKHLSKLTRLAINNRRFDGRALESPAPVANQGVITQLSEQISTLTERMDEFTNRIEELNSKFASRKASQQNIALPAEACNGSGHTSLFVTGLGNGSLTRSLLPHSSSSSQLARDAPLMEEVLLVARGQRQIIHQLDSLSTLLHEYCGERSRQGRTDQINRMHEVETIAIPLVLTLAIGAVGVFLFRGFTSQK* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4054 660 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 238 IPR027417 -
Amo01g4054 660 SUPERFAMILY CYTH-like phosphatases 263 409 IPR033469 -
Amo01g4054 660 PANTHER URIDINE KINASE 7 648 - -
Amo01g4054 660 CDD UMPK_like 69 241 - -
Amo01g4054 660 Pfam CYTH domain 272 406 IPR023577 -
Amo01g4054 660 ProSiteProfiles CYTH domain profile. 250 412 IPR023577 -
Amo01g4054 660 Gene3D - 256 415 - -
Amo01g4054 660 PANTHER URIDINE-CYTIDINE KINASE C-LIKE ISOFORM X1 7 648 - -
Amo01g4054 660 Coils Coil 502 529 - -
Amo01g4054 660 PRINTS Uridine kinase signature 67 84 - -
Amo01g4054 660 PRINTS Uridine kinase signature 134 149 - -
Amo01g4054 660 PRINTS Uridine kinase signature 190 200 - -
Amo01g4054 660 PRINTS Uridine kinase signature 226 239 - -
Amo01g4054 660 Gene3D - 68 250 IPR027417 -
Amo01g4054 660 Pfam Phosphoribulokinase / Uridine kinase family 70 238 IPR006083 GO:0005524|GO:0016301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4054 Amo-Chr1 114832852 114837749 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g4054 68 238 PRT Gene Family AT5G40870 26.667 1.48e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4054 K00876 - gmx:100803122 1124.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1967 14 49321279 49332103 Amo01g4054 01 114832852 114837749 PCT
Amo15g1178 15 93040193 93049505 Amo01g4054 01 114832852 114837749 PCT