Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4047 ATGGAGATTAGTGCCATCATGGCTTCAGCAACTCCAAGACCTTCTCTTCCAATTCCAACTCCATCTTCTTCTTCTTCTTCTCCTTCTTCTTCAACATTAGTCTCAAACTCCAAGTTGCCATTGTTGAAGCGTTCATCACACATAACACTTCCAACCTCAACTACCATTTCACTTCTCGCACTCTTTTCACCACCCCATGAAGCCAAAGCAGCTCTCACCATCCCCAAGGACCAGATTGTCTCTTCTCTCAACGATGTGGAGAAGACGATTGATCAGGTTCAGGTGGTGGGTTCGAGTTTCCTTGATGCGGCACAGCGTGTTTTGGAGATTGTGGGGAATGCTTTGAAGCCTGGAATCGATGCGGCGATGCCGATTGTGCAGCAGGCTGGGGAGGAGGCCTTGAAGATAGCTTCCCCTGCCATCTCTGAAGCTTCCAAGAAGGCACAAGAAGCACTCCAAAGCACTGGTGTTGATCCCCAACCTGTCATCACTGCTGCCAAGACAGTCGTGGACACTGCACAACAAACAACCAAGGTGATTGAAGGCGCGAAGCCAATAGCTTCGGCGACAGTTGAAACAATATCTTCTTCAGATCCTACTGTGATTGCTGGAACAGCTGGAGCACTCTTTATTGCGTACCTCTTACTTCCTCCGATTTGGTCTGCCATCACCTTCAACTTCCGTGGTTACAAAGGTGAGCTTACGCCTGCTCAAACCCTCGATCTGATATCAACACAAAACTACTTCATGATTGATATTAGGTCAGAGAAAGATAAGGACAAGGCCGGTGTTCCCCGCCTTCCGTCTAGTGCGAAAAACAGAATGATTGCCATTCCATTGGAAGAACTCCCAAGCAAGCTCAGAGGACTTGTTAGGAATGTGAAGAAAGTGGAAGCTGAACTAGCAGCTTTGAAGATTTCTTACTTGAAGAAAATCAACAAAGGCTCCAACATTGTGATCATGGACTCGTACTCGGACTCGGCGAAAATAGTAGCAAGAACATTAACGAACCTCGGTTTCAAGAACACGTGGATTGTGGCAGACGGGTTCTCGGGGAACAAAGGGTGGTTACAGAGTAGACTAGGAACAGATTCTTATTTCTCTTCGTTTGCAGAGGTGTTGTCTCCATCAAGAGTCATCCCTGCAGCTGTTAGAGGTTTTGGAACAACCTCCCAATCAAGTGCCAAGCTTCTTCCTGGAGCTGATTGA 1209 0.4723 MEISAIMASATPRPSLPIPTPSSSSSSPSSSTLVSNSKLPLLKRSSHITLPTSTTISLLALFSPPHEAKAALTIPKDQIVSSLNDVEKTIDQVQVVGSSFLDAAQRVLEIVGNALKPGIDAAMPIVQQAGEEALKIASPAISEASKKAQEALQSTGVDPQPVITAAKTVVDTAQQTTKVIEGAKPIASATVETISSSDPTVIAGTAGALFIAYLLLPPIWSAITFNFRGYKGELTPAQTLDLISTQNYFMIDIRSEKDKDKAGVPRLPSSAKNRMIAIPLEELPSKLRGLVRNVKKVEAELAALKISYLKKINKGSNIVIMDSYSDSAKIVARTLTNLGFKNTWIVADGFSGNKGWLQSRLGTDSYFSSFAEVLSPSRVIPAAVRGFGTTSQSSAKLLPGAD* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4047 402 ProSiteProfiles Rhodanese domain profile. 244 365 IPR001763 -
Amo01g4047 402 CDD RHOD 238 352 - -
Amo01g4047 402 MobiDBLite consensus disorder prediction 1 36 - -
Amo01g4047 402 PANTHER RHODANESE/CELL CYCLE CONTROL PHOSPHATASE SUPERFAMILY PROTEIN 22 400 IPR044690 GO:0009704|GO:0071277|GO:0090333
Amo01g4047 402 Coils Coil 287 307 - -
Amo01g4047 402 PANTHER CALCIUM SENSING RECEPTOR, CHLOROPLASTIC 22 400 - -
Amo01g4047 402 MobiDBLite consensus disorder prediction 22 36 - -
Amo01g4047 402 Gene3D - 232 369 IPR036873 -
Amo01g4047 402 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 210 352 IPR036873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4047 Amo-Chr1 114763341 114765692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g4047 28 323 Sulfurtransferasese or Rhodanese AT5G23060 71.380 6.50e-154 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4047 - - adu:107469155 707.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g4047 01 114763341 114765692 Amo11g2474 11 130189035 130191470 hybridization