Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4041 ATGGAAAACCTAGGCACCCCATCACACCAACCTCATCATAACAATAATAGGGTTTCTAATTCAAAAAAGAGTGAGAAGAAGTTTCTTGGGGTTAGACAAAGGCCTTCAGGAAGATGGATTGCAGAGATCAAAGACTCTTCACAGAAACTAAGGCTTTGGTTGGGAACTTATGATAGAGCTGAAGATGCTGCACTTGCTTATGACCATGCTGCAAGCCTTCTTAGAGGAAGAAATGCTAAGACTAATTTTCCAATCACCCATGGTGCTTGTAGCACCATTATTCTTGGCAAGAATCCAAGGGCTTACCACCTCCTTAAGCAACATGCAGTTATGAAGAGCCACATGGCGCTTTCTTCGCACATGGTCAGGGATCCATTTGTCTCTTCTTCGCAATCATCCATTCTTCAGGATCATAATAATACTCTTGTTTTCCCCATCCCTGAAGAACAAGCTTCAGCTGATGGTAGTGGAGGATTTTCATTTGGATGTTGTAAGGTTTATTCTTCTGTTATTGTAGCTCCTTCTTTCAGTTCTTCATGA 540 0.4167 MENLGTPSHQPHHNNNRVSNSKKSEKKFLGVRQRPSGRWIAEIKDSSQKLRLWLGTYDRAEDAALAYDHAASLLRGRNAKTNFPITHGACSTIILGKNPRAYHLLKQHAVMKSHMALSSHMVRDPFVSSSQSSILQDHNNTLVFPIPEEQASADGSGGFSFGCCKVYSSVIVAPSFSSS* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4041 179 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110-LIKE 13 179 - -
Amo01g4041 179 Pfam AP2 domain 27 76 IPR001471 GO:0003700|GO:0006355
Amo01g4041 179 SUPERFAMILY DNA-binding domain 27 85 IPR016177 GO:0003677
Amo01g4041 179 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Amo01g4041 179 MobiDBLite consensus disorder prediction 1 32 - -
Amo01g4041 179 Gene3D AP2/ERF domain 26 86 IPR036955 GO:0003700|GO:0006355
Amo01g4041 179 CDD AP2 26 86 IPR001471 GO:0003700|GO:0006355
Amo01g4041 179 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 13 179 - -
Amo01g4041 179 MobiDBLite consensus disorder prediction 1 17 - -
Amo01g4041 179 MobiDBLite consensus disorder prediction 18 32 - -
Amo01g4041 179 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Amo01g4041 179 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Amo01g4041 179 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4041 Amo-Chr1 114708776 114709509 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g4041 21 83 AP2-EREBP Transcription Factor Family AT5G19790 66.667 1.27e-26 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo01g4041 AP2 2.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4041 K09286 - gmx:100807374 152.14