Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4033 ATGGCAGAATCACCTGAAACAGAAGAAAAGTTTCAAGCTTCAACCATCGTTATGAACGAAACGAAGAAAAAGATGAAGAATAAGAATAAGAAGAAGCGGCCTCGGGATTCTGAATCAGAGAACCAATCAGCTGAACCTCAACATGAAGAGGGCGCAGAATCCTTGGAAAACAATGCGAACAAGAAGAAGAAGAATAAGAAGTTGAAGGGAGTGGAAGAAGATAGCGACGTTGATAAAAATGGTGAAGAAGAAGAAGAGGAAGAAGAGAGGAAAGAGAAGAAGAAGAACAAGGGTGGTGGCGGTGGAATAATGAGTAACGATGAATTCTCTTCTCTAGGGTTATCAGAACCAACTTCGAAGGCAATTCGGGATATGGGGTTCTCATACATGACTCAGATTCAATCAAGGGCAATTCCACATCTTCTAATAGGAAAAGATGTTCTTGGCGCTGCCAGAACCGGTTCCGGGAAAACCCTTGCTTTTCTGGTCCCTGCTGTGGAGCTTCTCTATAATGTTCAGTTCACGCCTCGTAATGGTGCTGGTGTTATTATCATTTGCCCCACCAGAGAGCTTGCAATTCAGACGCATGCTGTAGCCAAGGAACTCCTCAAGTATCATTCGCAGACTCTTGGATTGATTATTGGAGGTTCGACGAGAAAACTCGAAGCCGAACGCATTGCTAAAGGGGTCAATCTGCTCGTGGCAACTCCTGGTCGTCTTCTGGATCATCTTCAGAATACAAAAGGGTTCATATATAAAAACTTGAAGTGCCTCATGATCGATGAAGCTGACAGGATACTAGAAGCTAACTTTGAGGAAGAAATGAAGCAGATTATTAAGATCCTTCCAAAGAATAGGCAAACGGCTTTATTTTCGGCTACGCAAACAAAGAAGGTTGAGGATCTTGCACGCTTGTCATTTCAGACAACTCCTATATATATTGATGTAGATGATGGGAGAACCAAGGTTACAAATGAAGGGTTAATGCAGGGTTATGTTGTTGTTCCCTGTGCCAAGCGATTCATGGTTCTCTATTCCTTCTTGAAGAGATTTCATTCAAAAAAAGTGATGGTGTTTTTTTCTTCATGTAACTCTGTGAAATTCCATACAGACATTCTTAATCATATTCATTTGAATTGCTCAAGTATTCATGGAAAACAAAAGCAGCAGACCCGAACAACCACCTTCTTTGACTTCTGCAAAGCAGAAAAGGGGATCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGCTGTGGACTGGATTGTGCAGTATGATCCACCAGATGAACCGAAGGAATATATCCACAGGGTTGGTAGAACAGCTCGTGGAGAAGGTGGAAAAGGAAATGCTTTACTGTTCCTGATTCCTGAAGAATTACAATTTCTTCGTTATCTGAAGGCAGCTAAGGTCCCTGTGAAAGAGTATGGATATGATGAAAAGAAGGTGGCAAATGTACAATCTCACCTGGAGGATTTGGTAGTCAACAACTTTTTCCTAAACAAGATGGCTAAAGATGCGTATAGATCCTATCTATTGGCATACAATTCACATTCTATGAAGGATATATTCAATATACACCGCCTCGATCTGAAGGACGTAGCGGCTTCTTTCTGTCTTGCAAACCCACCAAATGTGACTCTGAACTTAAACAGCAGTAAGAAAAGGAAGAACATGCGCAGAGTTGATGGAAGTAGTCACAGCAGCCCTCATGGAAAAAGAAATTTTCATTCTAAAAAGCAATTTGTGAGGCATTAA 1767 0.416 MAESPETEEKFQASTIVMNETKKKMKNKNKKKRPRDSESENQSAEPQHEEGAESLENNANKKKKNKKLKGVEEDSDVDKNGEEEEEEEERKEKKKNKGGGGGIMSNDEFSSLGLSEPTSKAIRDMGFSYMTQIQSRAIPHLLIGKDVLGAARTGSGKTLAFLVPAVELLYNVQFTPRNGAGVIIICPTRELAIQTHAVAKELLKYHSQTLGLIIGGSTRKLEAERIAKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRTKVTNEGLMQGYVVVPCAKRFMVLYSFLKRFHSKKVMVFFSSCNSVKFHTDILNHIHLNCSSIHGKQKQQTRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYGYDEKKVANVQSHLEDLVVNNFFLNKMAKDAYRSYLLAYNSHSMKDIFNIHRLDLKDVAASFCLANPPNVTLNLNSSKKRKNMRRVDGSSHSSPHGKRNFHSKKQFVRH* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4033 588 Coils Coil 77 97 - -
Amo01g4033 588 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 49 576 - -
Amo01g4033 588 SMART helicmild6 367 448 IPR001650 -
Amo01g4033 588 Pfam Helicase conserved C-terminal domain 343 447 IPR001650 -
Amo01g4033 588 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 138 313 IPR014001 -
Amo01g4033 588 MobiDBLite consensus disorder prediction 552 588 - -
Amo01g4033 588 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 259 267 IPR000629 -
Amo01g4033 588 Pfam DEAD/DEAH box helicase 131 302 IPR011545 GO:0003676|GO:0005524
Amo01g4033 588 MobiDBLite consensus disorder prediction 1 114 - -
Amo01g4033 588 Gene3D - 53 317 IPR027417 -
Amo01g4033 588 CDD DEADc_DDX18 118 315 IPR044773 GO:0003724|GO:0005524
Amo01g4033 588 Pfam Domain of unknown function (DUF4217) 489 549 IPR025313 -
Amo01g4033 588 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 107 135 IPR014014 GO:0003724
Amo01g4033 588 SMART ultradead3 126 331 IPR014001 -
Amo01g4033 588 Gene3D - 324 567 IPR027417 -
Amo01g4033 588 PANTHER RNA HELICASE 49 576 - -
Amo01g4033 588 MobiDBLite consensus disorder prediction 32 76 - -
Amo01g4033 588 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 469 IPR027417 -
Amo01g4033 588 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 343 497 IPR001650 -
Amo01g4033 588 SMART DUF4217_3 488 551 IPR025313 -
Amo01g4033 588 MobiDBLite consensus disorder prediction 559 573 - -
Amo01g4033 588 CDD SF2_C_DEAD 328 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4033 Amo-Chr1 114504546 114509143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g4033 102 467 Eukaryotic Initiation Factors Gene Family AT3G19760 28.065 6.27e-45 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4033 K13179 - gmx:100797375 897.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g4033 01 114504546 114509143 Amo11g2482 11 130581139 130587995 hybridization