Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4011 ATGACGTGGCGGAGGCTGTTAGAGCCTGTGGCTGCACACGCCTCCCTTCTCTGCTTCACTGCTTTGCTTCTTCTAAAGCTTCACCACCGCCTCTCCTTATCGATAATATTCTTTCCTCTTTGGATCTTTCATGCCATTGTGGCTCGAGGGAGGTTTTCATTGCCAGGGTTGTCAGCCCGACATAATCAAAATTGGGCAACAGGTCATGCTGTCGTTGCAATGCCATTACTTACTGCATTTGAACTGCTCCTTTGTATATATCTTGAGAGCATATGTGTTCGTGGTGCTCAAGTAGTCAATATGAAGATTGTGTTCCTTCCATTACTAATATTTGAAATCATTATTCTCATGGAAAATTTCAGATTATGTAGGGCTCTAATGCCAGGGGATGAAGAAAACATGAGTGCTGAGCACTTTTCGGTTGCAATCTCTAGGGTCTTCTTCATTACTGCTACAATTTTCACACTCTTAAAACTGAGTGGTGATTTACTCGTTCTCAGCTGGTGGGATTTATTTGTTAACCTTGCCATCGTCGAGTGCTTTGCTTTTCTTGTATGTACAAAGTGGTCCAATCTGGTCACCAGTGGTTTAGTGGTTTCTTCAGAGGGAAATCGACGCCTGAAGAGAATGTATTTAGAGGGGGCACCTGCTTGTGCTGAAAAGAAACCTGCACCGAGTTTCTTTTCTTTTCTTTTCCAGCTGCAAAGTGCTGGTGTAATGTTTGCAGCATCTGCCTTAGTGGAGAAACTTATACTGCTATTAAATAGTGGAGCTGCTCCAAGAATATATTCTAGAGGTGTTTCAAGAGTTCATGATTGTTACTTGGGCCTCTTGCACCATGGTTCTAGTTATAATACGTTCTCTGGCAACCCACCTGTACCTGAGATCATTAAGAAAATGCCTAAAAAGGATCTTGCTGAGGAGGTTTGGAGACTGCAGACAGCTCTTGGTGAGCAGGCAGAAATTACAAAATGCCGCGAGCGGGAGTATGAAAGGCTTAAAAATGAGAAAATATTATGCAGAATTTGTTTTCAGAGAGAGATTAGCATTGTACTACTTCCATGCAGGCATCGCAGTCTTTGCAGCACATGCGCGGCGAAATGCAAGAACTGCCCAATCTGCCGCGACAATATTATAATGCGGTTACCCAAAAAGAAGATGAGTTGGCGGAGGGTGTTGAAGTCTGCGCAGGCACTTGCTGCACACACCTTTCTCTTGTGCTTCACTGTTTTGCTTGTTCTCAAGCTCGATCACCGTCTCTATTCATCTTGGTGGATAATATTTTTCCCTCTTTGGATGTTTCATGCTGTTGTGGCTCGAGGAAGGTTTTCACTACCAGCACCATCAGCCCCGCGTAATCGAAATTGGGCACCRTGCCATGCCGTCGTTGCAATGCCATTGCTTATTGCATTTGAATTGCTCCTTTGTATATATCTTGAGAGCTTATACGTTCGTCACTTTCCAGCAGTCAATCTGAAGATTGTGTTCCTTCCCTTACTAATATTTGAAATCATCATTCTCATTGACAATTTCAGAATGTGTAGGGCTCTAATGCCAGGAGATGAAGAGAACATGAGTGATGAGGCGATATGGGAAACTCTTCCTTGGTCTAATCCGGTGATTCATAGAAATCCAAGAGAAGCCAGTTCTTCTTCTACTACTGTTAGATATCTTGACTGGAATGGCGGTTTAGTTGTTTCTTCTGAGGAAAATCAACATCCAGAGAGAATGTGTAGCCTGCAAGACATAGGAGGCCATTTCATGAAAGTACCGATTATTATATTCCAGATTCTTCTTTGTATGTACTTGGAGGGAACACCTGCTTGTGCCAGAAAGATACCTCTACTGATACTTTTCTCTCCCCTTTTCACGCTGCAAGGTGCTGGTGTACTGTTAGCTGGATCTAAGTTAGTGGAGAAACTTGTTTTGCTGCTAAACAGTGGAGCTGGTGGGGGAATTTATATTAGAATTTCTTCAACAGCTCATGATTGCTTGGGGTTCTTGCACCATGGTTCTAGGTTACTAGGTTGGTGGTCAATTGATGAAGGTAGTCGGGAAGAACAGGCACGCTTATACCAAGAGGGAGCATCTGGGTATAATACGTTCTGCGGTTATCCACCTGAGATTGTTAAGAAAATGCCTAAAAAAGATCTCGCTGAGGAGGTTTGGAGACTCCAGGCAGCTCTTGGTGAACAGACAGAAATTACGAAATACAGCCAGCAAGAGTATGAAAGACTTCAAAATAGTTTGTTTCGAGGGAGAGATAAGCGTTGTACTTCTCCCATGCCGGCATCACATCCTTTGCAGCAATTGCTCCGAGAAATGCAAGAATTGCCCGATTTGCCGCGTCACCATTGCAGAGCGGCTACCTGTGGATAA 2379 0.4363 MTWRRLLEPVAAHASLLCFTALLLLKLHHRLSLSIIFFPLWIFHAIVARGRFSLPGLSARHNQNWATGHAVVAMPLLTAFELLLCIYLESICVRGAQVVNMKIVFLPLLIFEIIILMENFRLCRALMPGDEENMSAEHFSVAISRVFFITATIFTLLKLSGDLLVLSWWDLFVNLAIVECFAFLVCTKWSNLVTSGLVVSSEGNRRLKRMYLEGAPACAEKKPAPSFFSFLFQLQSAGVMFAASALVEKLILLLNSGAAPRIYSRGVSRVHDCYLGLLHHGSSYNTFSGNPPVPEIIKKMPKKDLAEEVWRLQTALGEQAEITKCREREYERLKNEKILCRICFQREISIVLLPCRHRSLCSTCAAKCKNCPICRDNIIMRLPKKKMSWRRVLKSAQALAAHTFLLCFTVLLVLKLDHRLYSSWWIIFFPLWMFHAVVARGRFSLPAPSAPRNRNWAPCHAVVAMPLLIAFELLLCIYLESLYVRHFPAVNLKIVFLPLLIFEIIILIDNFRMCRALMPGDEENMSDEAIWETLPWSNPVIHRNPREASSSSTTVRYLDWNGGLVVSSEENQHPERMCSLQDIGGHFMKVPIIIFQILLCMYLEGTPACARKIPLLILFSPLFTLQGAGVLLAGSKLVEKLVLLLNSGAGGGIYIRISSTAHDCLGFLHHGSRLLGWWSIDEGSREEQARLYQEGASGYNTFCGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEYERLQNSLFRGRDKRCTSPMPASHPLQQLLREMQELPDLPRHHCRAATCG* 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4011 792 Pfam Transmembrane Fragile-X-F protein 25 195 IPR019396 -
Amo01g4011 792 Pfam Transmembrane Fragile-X-F protein 414 535 IPR019396 -
Amo01g4011 792 Pfam Transmembrane Fragile-X-F protein 536 624 IPR019396 -
Amo01g4011 792 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 194 - -
Amo01g4011 792 SUPERFAMILY RING/U-box 332 383 - -
Amo01g4011 792 Pfam Zinc finger, C3HC4 type (RING finger) 338 378 - -
Amo01g4011 792 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 536 749 - -
Amo01g4011 792 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 207 383 - -
Amo01g4011 792 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 194 - -
Amo01g4011 792 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 207 383 - -
Amo01g4011 792 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 536 749 - -
Amo01g4011 792 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 316 382 IPR013083 -
Amo01g4011 792 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 387 535 - -
Amo01g4011 792 ProSiteProfiles Zinc finger RING-type profile. 340 375 IPR001841 -
Amo01g4011 792 SMART ring_2 340 374 IPR001841 -
Amo01g4011 792 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 387 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4011 Amo-Chr1 114119917 114147333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g4011 387 722 C3H Transcription Factor Family AT1G18470 64.524 2.10e-174 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4011 - - ahf:112738273 666.381