Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4008 ATGTCATCATCAAGTGGAACCATTTGGAGCTATGAAGAAGAGAAAGCATTTGAGAATGCCATAGCCATGCATTGGATTGAAGAAGACTCAAAAGAGCAATGGGAGAAGATTGGTGAAGAAGTTCCAAGCAAAACCATAGAAGAATTGAAGCAACATTACCAGTTACTAGTGGAAGATGTAACTGCAATAGAAGCTGGTCAAATACCATTCCCAAACTATACATCAGAAGAAACTACATCTTCAAGTAAAGATCTCCATGGATCTTCCAAGTCTTCAAATTCTGATAAGAGATCAAATTGTAACTATGGAAGTGGATTCTCTGGCTTAGGACATGATTCCTCAACCTCTCATAATGGTAAAGGATCCTTGTCAAGATCATCAGAACAAGAAAGGAGAAAAGGAATTCCATGGACAGAAGAAGAACACAGGCTATTCTTACTTGGTCTAGACAAGTTTGGAAAAGGAGATTGGAGAAGCATTTCAAGGAACTTTGTGATTTCAAGGACTCCAACACAAGTAGCAAGTCATGCACAAAAGTACTTCATAAGATTGAACTCAATGAATAGAGATAGAAGAAGGTCTAGTATCCATGACATTACAAGTGTCAACAATGGAGATGTGGCCAATAATCAAGCACCAATTACAGGACAGCATGGAGGCACAACAATCTCATCAAGCACAATAGCTATGGGACAATCAATGAAGCATAGAGCACAACCACACCATCATCATCATCATATACCTGCTGGTTTAGGCATGTATGGTGCACCAGTTGGGCACCCTGTGGCTGCTCCTCATGGCCATATGGCATCTGCAGTTGGAACTCCGGTCATGCTTCCTCCCGGACCGCACCCTCATCCGCATCCACATCCTCATCATCCACCTTATGTTGTTCCTCTTGCTTATCCAATGGCACCTCCAACAATGCACCAATAA 936 0.4177 MSSSSGTIWSYEEEKAFENAIAMHWIEEDSKEQWEKIGEEVPSKTIEELKQHYQLLVEDVTAIEAGQIPFPNYTSEETTSSSKDLHGSSKSSNSDKRSNCNYGSGFSGLGHDSSTSHNGKGSLSRSSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVANNQAPITGQHGGTTISSSTIAMGQSMKHRAQPHHHHHHIPAGLGMYGAPVGHPVAAPHGHMASAVGTPVMLPPGPHPHPHPHPHHPPYVVPLAYPMAPPTMHQ* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4008 311 PANTHER TRANSCRIPTION FACTOR MYBS1 5 310 - -
Amo01g4008 311 MobiDBLite consensus disorder prediction 71 123 - -
Amo01g4008 311 CDD SANT 9 57 IPR001005 -
Amo01g4008 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 185 IPR017930 -
Amo01g4008 311 SMART sant 5 59 IPR001005 -
Amo01g4008 311 SMART sant 133 183 IPR001005 -
Amo01g4008 311 ProSiteProfiles SANT domain profile. 137 185 IPR017884 -
Amo01g4008 311 Pfam Myb-like DNA-binding domain 9 55 IPR001005 -
Amo01g4008 311 Pfam Myb-like DNA-binding domain 136 181 IPR001005 -
Amo01g4008 311 ProSiteProfiles Myb-like domain profile. 129 181 IPR001005 -
Amo01g4008 311 ProSiteProfiles Myb-like domain profile. 9 57 IPR001005 -
Amo01g4008 311 SUPERFAMILY Homeodomain-like 131 186 IPR009057 -
Amo01g4008 311 MobiDBLite consensus disorder prediction 71 135 - -
Amo01g4008 311 PANTHER TRANSCRIPTION FACTOR KUA1 5 310 - -
Amo01g4008 311 Gene3D - 135 187 - -
Amo01g4008 311 Gene3D - 1 70 - -
Amo01g4008 311 SUPERFAMILY Homeodomain-like 9 63 IPR009057 -
Amo01g4008 311 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 133 183 IPR006447 GO:0003677
Amo01g4008 311 CDD SANT 136 181 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4008 Amo-Chr1 114060627 114062172 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo01g4008 Myb_DNA-binding 8.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4008 - - vun:114176836 484.567