Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3972 ATGAGCAACGCAGGACAACAGCAACAGCAACAAGGGATTGATGAAGCAATTCTTGACGACATAATCCGCCGCCTTACGGAGGTCCGATTGGCCAGACCTGGAAAGCAGGTTCAGCTCTCTGAAGCCGAGATCAAGCAGCTTTGTGTTGCTTCCAGAGATATCTTCCTTCAACAGCCTAATTTGTTAGAACTCGAAGCCCCCATCAAGATTTGTGGTGATATTCATGGGCAGTACAGTGATTTGTTGAGGCTCTTTGAGTATGGAGGTTTACCTCCCAGTGCTAATTATCTCTTTTTAGGAGACTATGTCGATCGCGGGAAGCAGAGCTTGGAAACTATATGCCTCTTGCTTGCCTATAAAATCAAGTATCCGGAAAACTTTTTCTTGTTGAGGGGAAATCATGAGTGTGCTTCCATCAATAGGATATATGGATTCTACGACGAATGTAAGCGGAGGTTCAATGTGCGGCTCTGGAAAGCCTTTACGGATTCTTTTAACTGTCTGCCTGTGGCAGCCCTTATAGATGATAAAATACTGTGCATGCATGGTGGCCTTTCCCCTGAACTCACAAACTTGGATCAAATTAGGAATTTGCCGCGTCCTACTGCTATTCCAGACACTGGCTTGCTTTGTGATCTGCTTTGGTCTGATCCGGGTAGAGATGTGAAGGGTTGGGGTATGAATGACAGAGGAGTTTCTTACACATTTGGCCCGGATAAGGTTGCGGAGTTTTTGACAAAGCATGACTTGGACCTTATTTGTCGTGCTCATCAGGTTGTAGAGGATGGATATGAATTTTTTGCTGAAAGGCAACTTGTTACAATATTTTCGGCTCCAAACTACTGTGGCGAGTTTGACAATGCTGGTGCCATGATGAGTGTAGATGAAAACTTGATGTGTTCCTTTCAAATTCTCAAGCCTGCAGAGAAAAAGATAAAGTTCGGAATGGCAAACAAGATTTGA 963 0.4424 MSNAGQQQQQQGIDEAILDDIIRRLTEVRLARPGKQVQLSEAEIKQLCVASRDIFLQQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGLPPSANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKAFTDSFNCLPVAALIDDKILCMHGGLSPELTNLDQIRNLPRPTAIPDTGLLCDLLWSDPGRDVKGWGMNDRGVSYTFGPDKVAEFLTKHDLDLICRAHQVVEDGYEFFAERQLVTIFSAPNYCGEFDNAGAMMSVDENLMCSFQILKPAEKKIKFGMANKI* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3972 320 SMART pp2a_7 39 309 IPR006186 GO:0016787
Amo01g3972 320 PRINTS Serine/threonine phosphatase family signature 67 94 IPR006186 GO:0016787
Amo01g3972 320 PRINTS Serine/threonine phosphatase family signature 96 123 IPR006186 GO:0016787
Amo01g3972 320 PRINTS Serine/threonine phosphatase family signature 129 153 IPR006186 GO:0016787
Amo01g3972 320 PRINTS Serine/threonine phosphatase family signature 163 189 IPR006186 GO:0016787
Amo01g3972 320 PRINTS Serine/threonine phosphatase family signature 192 219 IPR006186 GO:0016787
Amo01g3972 320 PRINTS Serine/threonine phosphatase family signature 249 269 IPR006186 GO:0016787
Amo01g3972 320 PRINTS Serine/threonine phosphatase family signature 271 287 IPR006186 GO:0016787
Amo01g3972 320 Gene3D - 10 318 IPR029052 -
Amo01g3972 320 SUPERFAMILY Metallo-dependent phosphatases 28 313 IPR029052 -
Amo01g3972 320 CDD MPP_PP1_PPKL 18 307 - -
Amo01g3972 320 Pfam Serine-threonine protein phosphatase N-terminal domain 18 65 IPR031675 -
Amo01g3972 320 ProSitePatterns Serine/threonine specific protein phosphatases signature. 130 135 IPR006186 GO:0016787
Amo01g3972 320 Pfam Calcineurin-like phosphoesterase 67 259 IPR004843 GO:0016787
Amo01g3972 320 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 11 313 - -
Amo01g3972 320 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 11 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3972 Amo-Chr1 113587085 113590671 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3972 68 252 Calmodulin-binding Proteins AT5G63870 32.127 1.22e-25 102