Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3971 ATGTGGAACTCGGCAGATAATGCGTTTGCGAGATCGTCGTCGTTTCGGAAGGAAGGGGAGGATGAGGAGGCACTGCGGTGGGCCGCGCTTGAGAGGCTCCCTACCTACAGGCGAGCACGGAGGGGGATCTTCAAGAATCTCGGTGGCGATAAGAGGGAGGTCGACGTCGCAGACCTTGGCGCACAGGAGCATCGGATCCTTCTCGAGAGGCTCGCCGATGCACTTGACGACGATCCTGAGACGTTCTTTCAGCGAATGAGAAACCGATTCGACGCAGTAGATTTGGAGTTTCCAAAGATTGAAGTTCGATTTCAAAACTTAACTGTAGAGACTTTTGTCCATGTAGGAAGTAGAGCATTGCCTACAATTTCCAATTTCATTTGCAATATGAGTGAGGCTTTTTTACGGCAACTGAGGATATTAAGAAGGAAGAGAAGCAAATTGACCATTCTTGCCGATATTAGTGGGATTATAAGGCCTTCAAGACTAACGCTGTTGTTGGGTCCACCAAGCTCTGGAAAAACGACACTTCTATTAGCTCTTGCTGGTAGGCTGGGACCTGGTTTACAGATGTCAGGGAACATTACGTACAATGGACATGGTTTGAATGAGTTTGTTCCTCAAAGAACGTCTGCTTATGTCAGTCAACAAGATTGGCACGTGGCAGAGATGACCGTGAGGGAAACTCTCCAGTTTGCAGGCCGCTGTCAAGGCGTCGGATTTAAATTTGATATGCTGCTAGAGCTTGCTAGGAGAGAAAAGAGTGCTGGAATAAAACCAGATGTTGATCTTGATATCTTCATGAAGTCAATTGCTCTTGGAGGACAGGAAACAGATCTTGTGGTAGAGTACATCATAAAGATATTAGGTTTGGACATATGTGGAGACACATTGGTGGGCGATGAAATGCTCAAGGGCATCTCAGGGGGACAAAAGAAGCGACTTACAACAGGAGAGTTACTAATTGGTCCAGCAAGAGTTCTGTACATGGACGAGATATCAACCGGCCTCGATAGTGCAACCACTTACCAAATCATTAGATATCTTAAACATTCTACCCGTGCACTTGATACAACCACTATCATATCTCTTCTTCAACCAGCTCCTGAGACCTATGAATTGTTTGATGATGTCATTCTATTGTGCGAGGGTCAGATTGTTTATCAAGGGCCCCGTGAATCTGCTCTTGAATTTTTCAAAATGATGGGGTTCACTTGTCCTGAGCGAAAGAATGTAGCAGATTTCTTACAAGAAGTTACGTCAAAGAAGGACCAGGAGCAGTACTGGTCTGCTCTGGACCAGCCTTATCGGTACATACCTGTTGGGAAGTTTGCCCAAGCGTTTTCATTGTATCGCGAGGGAAAGAACTTATCAGAGGAACTAAGAGCTCCTTTCGATAAACGCTACAATCATCCCGCAGCCTTGGCTACTTGTACCTATGGCGCCACCAGGCTTGACCTTCTCAGGACAAATTACCAGTGGCAGAAGCTTCTTATGAAACGGAATTCATTCATTTATGTTTTCAAATTTGTTCAGCTGTTTTTGGTAGCTTTAATTACAATGAGTGTATTTTTCCGGACAACGATGCACCATAATACAATTGACGACGGGGGATTATATCTTGGTTCACTGTACTTTTCGATGGTTATTATTCTCTTCAATGGTTTTACGGAGGTGTCAATGTTGGTTGCAAAGCTTCCAGTTTTGTACAAGCATAGAGATTTGCACTTCTATCCTAGCTGGGCATATACAATCCCTTCTTGGTTCCTTAGCATCCCAACTTCTCTCATGGAAGCTGGTTGCTGGGTTGCTGTCTCTTACTATACAATTGGATATGATCCTTCAATTATCAGATTTTTTCGGCAATTCTTGCTTTATTTCTTTCTGCACCAGATGTCTCTAGGCCTATTTCGTCTGATAGGATCCTTGGGGCGGAACATGATAGTGGCCAATACTTTTGGATCCTTTGCCATGTTGATTGTGATGGCTCTTGGCGGATACATCATTTCAAGAGATCGCATTCCAAGTTGGTGGATATGGGGTTTTTGGATTTCTCCTTTAATGTATGCACAAAATTCGGCTTCCGTAAATGAGTTCCTTGGGCATTCCTGGGATAAGGTATCATTTACACCACAGTACAAAATCAGATCACCAACTATCCCTTGGAGCTATTGGTATTGGATTGGTCTTGGAGCAATGGTTGGATATACAATTTTGTTCAACACATTATTTACTATCTTCTTAGCTTACCTTAATCCTTTGGGAAAACAACAAGCTGTAGTTTCAAAGAGTGAGCTACAAGAAAGAGAAAAGAGAAGGAAAGGTGAAAGTGTTATTGTTGAGTTGAGAGAGTACTTGCAGCATTCAGCATCCAGTGGAAAGCATTTCAAACAAAGAGGAATGGTTCTCCCATTTCAACCTCTTTCCATGGCTTTCAGCAATATCAATTACTATGTGGATGTCCCTTTGGTGCGTAAAAAGAAATCCACCATGGCCCCCAAAAAAGAATTGAAACAACAAGGGATACAAGAAGAAAGGCTGCAGCTGCTTGTTAATGTTACTGGAGCTTTTAGGCCTGGAGTGTTGACAGCATTGGTTGGAGTAAGTGGGGCTGGAAAAACCACGCTAATGGATGTCTTGGCTGGAAGAAAAACTGGAGGTGTTATAGAAGGGAACATATACATATCTGGTTATCCCAAAAGGCAAGACAGTTTTGCAAGAATTTCTGGTTATTGTGAGCAGACAGATGTTCATTCCCCTTGCTTGACTGTCTGGGAGTCATTATTGTTCTCTGCTTGGCTCCGGTTATCTTCAGATGTTGACTTTGAAACACAAAAGGCCTTTGTTGAGGAGGTAATGGAGCTTGTGGAGCTCACTCCATTGAAAGGGGCACTAGTTGGTCTACCTGGAATTGATGGCTTGTCAACAGAACAACGAAAAAGATTAACAATAGCAGTTGAACTGGTTGCAAACCCATCTATAGTTTTCATGGATGAGCCCACTTCTGGATTGGATGCCAGGGCTGCAGCCATTGTAATGAGAACTGTTAGGAATATAGTGAATACTGGCCGAACCATCGTGTGCACAATCCATCAGCCTAGCATAGACATATTCGAATCGTTTGATGAGCTTCTGTTTATGAAGCGTGGAGGAGAGCTCATATATGCTGGTCCACTTGGCCCTAAATCTAGTGAACTTATCAATTATTTCGAGGCAGTGGAAGGGGTTCCGAAGATCAGGTCCGGATATAACCCTGCAACATGGATGTTGGAGGTTACTTCTTCAACAGAAGAAAACCGTTTGGGAGTGGACTTTGCAGAAATATACCGAAGATCAAGTTTATACCAGTATAATAAAGAATTGGTTGAAAGCTTGAGCAGGCCGAGCAATAATTCAAAAGAGTTGCATTTTCCAACCAAGTATTGTCGGTCATATTTTGATCAGTTTCTAACTTGTCTTTGGAAGCAAAATCTATCTTACTGGCGTAACCCACACTACACTGCTGTTCGCTTCTTTTACACTGTCATCATCTCCTTGATGCTTGGGACAATATGCTGGAGATTTGGTGCTAAAAGAGAGATGCAGCAAGATCTATTCAATGCCATGGGATCCATGTATTCTGCAATCCTCTTCATCGGCATAACAAATGGCACAGCCGTTCAACCTGTTGTTTCGGTTGAAAGATTTGTTTCATATAGAGAAAGAGCTGCTGGGATGTATTCGGCCTTACCATTTGCTTTTGCTCAGGTTATTATTGAGTTTCCTTATGTGTTCGCACAGGCTATGATATACTCCACAATTTTCTATTCTATGGCTTCCTTTGTCTGGAGTGTTGATAGGTTCATATGGTACTTGTTCTTCATGTATGTTACTATGCTGTATTTTACCTTCTATGGAATGATGACAACGGCTGTCACACCAAACCATAATGTTGCTGCCATTATCGCTGCTCCATTTTACATGTTATGGAACCTTTTCAGTGGTTTTATGATTCCTCACAAGAGAATCCCTGTTTGGTGGAGATGGTATTACTGGGCAAACCCTGTAGCCTGGAGTCTTTATGGTCTCCTGACTTCACAGTATGGTGGTGATGAAAAATCTGTGAAGCTATCCAATGGGAATTCCATGGCTATTTCGCAAGTACTCAGATTGGTGTTTGGGTACAGGCATGATTTCTTGTGCGTTGCCGCTGTTATGGTTGCTGGCTTCTGCGTATTTTTTGCAATAATATTTGCCTTTGCAATTAAATCCTTCAATTTCCAAAGGAGATGA 4272 0.4284 MWNSADNAFARSSSFRKEGEDEEALRWAALERLPTYRRARRGIFKNLGGDKREVDVADLGAQEHRILLERLADALDDDPETFFQRMRNRFDAVDLEFPKIEVRFQNLTVETFVHVGSRALPTISNFICNMSEAFLRQLRILRRKRSKLTILADISGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGPGLQMSGNITYNGHGLNEFVPQRTSAYVSQQDWHVAEMTVRETLQFAGRCQGVGFKFDMLLELARREKSAGIKPDVDLDIFMKSIALGGQETDLVVEYIIKILGLDICGDTLVGDEMLKGISGGQKKRLTTGELLIGPARVLYMDEISTGLDSATTYQIIRYLKHSTRALDTTTIISLLQPAPETYELFDDVILLCEGQIVYQGPRESALEFFKMMGFTCPERKNVADFLQEVTSKKDQEQYWSALDQPYRYIPVGKFAQAFSLYREGKNLSEELRAPFDKRYNHPAALATCTYGATRLDLLRTNYQWQKLLMKRNSFIYVFKFVQLFLVALITMSVFFRTTMHHNTIDDGGLYLGSLYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWAYTIPSWFLSIPTSLMEAGCWVAVSYYTIGYDPSIIRFFRQFLLYFFLHQMSLGLFRLIGSLGRNMIVANTFGSFAMLIVMALGGYIISRDRIPSWWIWGFWISPLMYAQNSASVNEFLGHSWDKVSFTPQYKIRSPTIPWSYWYWIGLGAMVGYTILFNTLFTIFLAYLNPLGKQQAVVSKSELQEREKRRKGESVIVELREYLQHSASSGKHFKQRGMVLPFQPLSMAFSNINYYVDVPLVRKKKSTMAPKKELKQQGIQEERLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGVIEGNIYISGYPKRQDSFARISGYCEQTDVHSPCLTVWESLLFSAWLRLSSDVDFETQKAFVEEVMELVELTPLKGALVGLPGIDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGPKSSELINYFEAVEGVPKIRSGYNPATWMLEVTSSTEENRLGVDFAEIYRRSSLYQYNKELVESLSRPSNNSKELHFPTKYCRSYFDQFLTCLWKQNLSYWRNPHYTAVRFFYTVIISLMLGTICWRFGAKREMQQDLFNAMGSMYSAILFIGITNGTAVQPVVSVERFVSYRERAAGMYSALPFAFAQVIIEFPYVFAQAMIYSTIFYSMASFVWSVDRFIWYLFFMYVTMLYFTFYGMMTTAVTPNHNVAAIIAAPFYMLWNLFSGFMIPHKRIPVWWRWYYWANPVAWSLYGLLTSQYGGDEKSVKLSNGNSMAISQVLRLVFGYRHDFLCVAAVMVAGFCVFFAIIFAFAIKSFNFQRR* 1424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3971 1423 Pfam ABC-2 type transporter 1148 1360 IPR013525 GO:0016020|GO:0140359
Amo01g3971 1423 Pfam ABC-2 type transporter 490 699 IPR013525 GO:0016020|GO:0140359
Amo01g3971 1423 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 847 1058 IPR027417 -
Amo01g3971 1423 SMART AAA_5 859 1051 IPR003593 -
Amo01g3971 1423 SMART AAA_5 160 385 IPR003593 -
Amo01g3971 1423 CDD ABCG_PDR_domain2 807 1057 IPR034003 -
Amo01g3971 1423 Pfam ABC transporter 152 333 IPR003439 GO:0005524
Amo01g3971 1423 PANTHER ATP-BINDING CASSETTE TRANSPORTER 9 1423 - -
Amo01g3971 1423 Gene3D - 836 1066 IPR027417 -
Amo01g3971 1423 Pfam ABC-transporter N-terminal 76 126 IPR029481 -
Amo01g3971 1423 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 409 IPR027417 -
Amo01g3971 1423 Pfam ABC-2 type transporter 366 419 IPR043926 GO:0140359
Amo01g3971 1423 Gene3D - 136 435 IPR027417 -
Amo01g3971 1423 Pfam Plant PDR ABC transporter associated 723 761 IPR013581 -
Amo01g3971 1423 Pfam ABC transporter 851 1002 IPR003439 GO:0005524
Amo01g3971 1423 PANTHER ABC TRANSPORTER G FAMILY MEMBER 32 9 1423 - -
Amo01g3971 1423 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 824 1075 IPR003439 GO:0005524
Amo01g3971 1423 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 135 408 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3971 Amo-Chr1 113554934 113563601 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3971 847 1034 Calmodulin-binding Proteins AT2G36910 25.521 1.90e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3971 K08711 - gmx:100815410 2533.83