Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3969 ATGTCTCACGCCAACTGGGAAGCTGATAAAATGCTGGATGTGTATATCTATGATTATCTGATGAAGAGGCAGTTGCATGCTTCTGCCAGGGCATTCCAGGCCGAAGGAAATGTGTCGACCGACCCTGTTGCAATAGATGCGCCTAGTGGTTTTCTCTTCGAGTGGTGGTCTGTTTTCTGGGACATATATATTGCAAGGACCGATCAGAAACACTCAGAAGCAGCAGCAATTTATAGCAAGAAACGTGCAACTTCTAATGCTATGGCAACAAGAGTGTATGAGGACAGGTTGAAGTTGCCACTCCAGAGAGATGATTTAGATGATGTTGCTCTCAAGCAAAAGGGAAGTGGTAATGTTGGCCAGCTTCTGGACCCAAATCATGCCTCATTGTTGAAAGGAGTAGCAGTGACAACTGGTGGCCAGGCTACAGGTCAAACGTCTCTCGGTGCACCTAACATTTTACAAGGCAGTCTTCAACAAGTTCAAAATCAGAACCAGCATCTTCCAGGATCTCTGGACATGAAAAGTGATATGAATCCAATGGTTAGACCTCAAGCTGTTATACCAGATGGATCCTTTGTTGGTGGACATGGTTCAAATCAAGGTTGTAGCAATTTGACTCTGAAGGGATGGCCTCTAGCAGGACTGGATCAGCTTCGCTCAGAATTTCTTCAGCAGAATAATTTGATGCAGCCTCCACATTCTCTCAATCATCTTTCAGTGCAGCAGCAACTTATACTTCAGGCACAACAACATGCTGTAGGTTCCCCCTCTGCCACTGATTTTGAGAACAGAAGACTCAGGATGCTTCTTAATAATCCAAATATGGGTCTTGTGAAAGATGGACGACCGAATTCAGCATATGACTCAATTCCTAATGTGTTGGCTGCACAAGTTCAACAAATGCAAAACAGCAGTCACCAGCTTCAACAACATCTGCAGCATCCTCCTTCAAACCAGCAGTTGCAGAATCTCCAGCGGCAAGGAAAAATTGGTTCCGGGAGCAATACACAAGATGGGTGCATGTCCACCTTACAAGGAAATGATCAGGCTTCCAAAACTCAAGTTGGCCGAAAGCGAAAGCAAGCATCATCTTCTGGTCCTGCCAATAGTTCTGGAACAGCAACCACCACAGGACCATCTACCAAATGTTCCATCTTCAAGTCATTGCTTATGTTTGGTACTGATAGCTTGGGATCACTTACATCGGCCCAAAATCAACTGGCTGATATGGACTGCCTTATTGGTGACGGAACTTTCAGTGACAATGTTGAGTCGCTCTTTTCTGCTGATGATGCAGACCCTAGAGATAAGATTGGCAAAGACAAATGTGTTATGGCAAGCACACATAAAGTTGAGTGTTGCCACTTCTCATCAGATGGAAAACTGTTTGCTACTGGTGGCCATGATAAAAAGGTATCTTTGTGGTGCACAGAATCGTTTAACCTGAAGTCGACACTAGATGAACATACTCAGTTGATAACCGATGTTCGATTTAGTTCTTCAAGGACATCGCGCCTTGCTACATCCTCAGCTGACAAAACTGTTCGGATTTGGGATACTGAAAATCCTGGTTATTCTCTTCGAACATTCACAGGACATGGTTCAACTGTGATGTCACTAGACTTTCACCCTAGTAAAGACGACCTTATTTTCTCTTGTGACAATAATGAGATAAGATACTGGAGTATTAAAAACGATGGTTGTGCTGGGGTTTACAAGATTTCAACCTCGTTTGGGAAGGCTTCTTGCAGCTGCGTAGATAATCTCATTTCCATTATTGATGTAGAAACCCTCGGTTGCACACTCAAATTACAGGGCCATAATAACCTTGTCCGTTCGGTTTGCTGGAACAGTTCTGGAAAATATCTAGCATCTCTTAGTGATGATCTTGTTAGGGTATGGACAGTTGGATCAAGTAGCAAAGGGGAGTGCATTCATGAACTCAATGCATCCAGGAACAAATTCAACACCTGTGCCTTCCACCCCTTCTATCCTTTTCTGATCATTGGCTGCAATGAAGCAATTGAGCTGTGGGACTTTGTTCAGAACAAGACATTGACACTGGCTGCTCATGAAAAGCTTGTATCATCCTTGGCAGTATCTAGTGTTAATGGTTTGGTTGCTTCAACTAGTCATGACAAGCATTTCAAGATCTGGAACTGA 2166 0.4367 MSHANWEADKMLDVYIYDYLMKRQLHASARAFQAEGNVSTDPVAIDAPSGFLFEWWSVFWDIYIARTDQKHSEAAAIYSKKRATSNAMATRVYEDRLKLPLQRDDLDDVALKQKGSGNVGQLLDPNHASLLKGVAVTTGGQATGQTSLGAPNILQGSLQQVQNQNQHLPGSLDMKSDMNPMVRPQAVIPDGSFVGGHGSNQGCSNLTLKGWPLAGLDQLRSEFLQQNNLMQPPHSLNHLSVQQQLILQAQQHAVGSPSATDFENRRLRMLLNNPNMGLVKDGRPNSAYDSIPNVLAAQVQQMQNSSHQLQQHLQHPPSNQQLQNLQRQGKIGSGSNTQDGCMSTLQGNDQASKTQVGRKRKQASSSGPANSSGTATTTGPSTKCSIFKSLLMFGTDSLGSLTSAQNQLADMDCLIGDGTFSDNVESLFSADDADPRDKIGKDKCVMASTHKVECCHFSSDGKLFATGGHDKKVSLWCTESFNLKSTLDEHTQLITDVRFSSSRTSRLATSSADKTVRIWDTENPGYSLRTFTGHGSTVMSLDFHPSKDDLIFSCDNNEIRYWSIKNDGCAGVYKISTSFGKASCSCVDNLISIIDVETLGCTLKLQGHNNLVRSVCWNSSGKYLASLSDDLVRVWTVGSSSKGECIHELNASRNKFNTCAFHPFYPFLIIGCNEAIELWDFVQNKTLTLAAHEKLVSSLAVSSVNGLVASTSHDKHFKIWN* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3969 721 ProSiteProfiles Trp-Asp (WD) repeats profile. 689 721 IPR001680 GO:0005515
Amo01g3969 721 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 81 721 IPR044716 GO:0003714
Amo01g3969 721 ProSiteProfiles Trp-Asp (WD) repeats profile. 487 523 IPR001680 GO:0005515
Amo01g3969 721 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 689 721 - -
Amo01g3969 721 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 487 523 - -
Amo01g3969 721 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 3 81 IPR044716 GO:0003714
Amo01g3969 721 SUPERFAMILY WD40 repeat-like 450 721 IPR036322 GO:0005515
Amo01g3969 721 SMART WD40_4 598 636 IPR001680 GO:0005515
Amo01g3969 721 SMART WD40_4 438 477 IPR001680 GO:0005515
Amo01g3969 721 SMART WD40_4 480 520 IPR001680 GO:0005515
Amo01g3969 721 SMART WD40_4 682 721 IPR001680 GO:0005515
Amo01g3969 721 SMART WD40_4 642 680 IPR001680 GO:0005515
Amo01g3969 721 SMART WD40_4 524 563 IPR001680 GO:0005515
Amo01g3969 721 ProSiteProfiles Trp-Asp (WD) repeats profile. 605 637 IPR001680 GO:0005515
Amo01g3969 721 PANTHER LISH-SSDP-WD40 3 81 - -
Amo01g3969 721 Pfam LisH 10 36 IPR006594 GO:0005515
Amo01g3969 721 CDD WD40 449 721 - -
Amo01g3969 721 ProSiteProfiles Trp-Asp (WD) repeats profile. 531 566 IPR001680 GO:0005515
Amo01g3969 721 PANTHER LISH-SSDP-WD40 81 721 - -
Amo01g3969 721 SMART Lish 8 40 IPR006594 GO:0005515
Amo01g3969 721 Gene3D - 583 721 IPR015943 GO:0005515
Amo01g3969 721 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Amo01g3969 721 Gene3D - 422 582 IPR015943 GO:0005515
Amo01g3969 721 MobiDBLite consensus disorder prediction 323 380 - -
Amo01g3969 721 Pfam WD domain, G-beta repeat 527 563 IPR001680 GO:0005515
Amo01g3969 721 Pfam WD domain, G-beta repeat 686 721 IPR001680 GO:0005515
Amo01g3969 721 Pfam WD domain, G-beta repeat 448 476 IPR001680 GO:0005515
Amo01g3969 721 Pfam WD domain, G-beta repeat 601 635 IPR001680 GO:0005515
Amo01g3969 721 Pfam WD domain, G-beta repeat 483 520 IPR001680 GO:0005515
Amo01g3969 721 ProSitePatterns Trp-Asp (WD) repeats signature. 507 521 IPR019775 -
Amo01g3969 721 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 531 566 - -
Amo01g3969 721 ProSiteProfiles Trp-Asp (WD) repeats profile. 445 476 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3969 Amo-Chr1 113520156 113526148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3969 525 721 Miscellaneous Gene Families AT5G08390 24.645 5.78e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Amo01g3969 WD40 0.012 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3969 - - aip:107624271 1096.26