Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3962 ATGAAGGATCCAAAGGAGGATGAAGAGAAATCTAGGAGGGTTGTGGAGAAATCCACGGAGCTTAGAAGAAGGGGAAGAAGGAGAAACAAGCAATGCAGCAAAGCAGATAGATTACAAGAGAAAGGATTTGATTCACAGCTTGTGTCCTCTACTTGTTCCAAGAATCTTGTGTTCGCTGCAAGGCCTGGCTATGGCCACCTTGGAACAAAATGTGTCGTCAAAGCTAACCACTTCCTTGCAGATATTTCAGCATCTGACCTCAGCCATTACACTGTTAAGATAATACCTGAAGTGAGGTGTCGCAAAACAAGCAAAGCTATAATAGCTGAGTTGGTGAGGGTTCATAAGAACACTGACTTAGGGATGAGGCTTCCTGTTTATGATGGAGGAAGGAATCTTTACACTGCTGCCATGCTTCCTTTCACATACAAAGAGTTCACTATATTATTGACTGAAGATGATGAGAGTATTGGTACTACCAGGGAAAGAGAGTTTATGGTGGTAATCAAGTTTGCTGCTCGTGTTAGCATGCATCAATTACGTGAGCTTCTCAGTGGAAAACAAGTGGACACACCACAAGAAGCACTTACTGTTATTGACATTGTTCTGAGGGAGCTTGCAGCACAGAGTTACGTGTCCATTGGGAGGTTTCTGTATTCTCCTGATTTTAGAAAACCACAGCAGCTTGGTGGTGGCTTAGAATCATGGCGTGGATTCTACCAAAGTATAAGGCCTACCCAGATGGGTTTATCACTTAATATTGACATGTCATCAATGGCGTTTATTGAGCCACTCCCTGTGATTGACTTTGTTGCTCAAATTTTGGGAAAAGATGTGCACTCAAAGCCATTGTCAGATGCAGATCGTGTCAAGATTAAGAAGGCCCTAAGAGGTGTAAAAGTTGAAGTTACGCATAGAGGGAGTTTTAGAAGGAAGTACAGGATATCAGGATTGACATCACAGCCAACAAGGGAGCTTAACTTCCCTCTTGATGAGAAAATGAACATGAAATCAGTGGTTGATTATTTTCAAGAAATGTATGGATACACTATCAAGTATCCTCATCTACCTTGTCTTCAAGTAGGAAGCCAAAAGAAGGTGAACTATTTGCCAATGGAGGCATGCAAGATAGTTGGAGGCCAGAGGTATACAAAAGGGCTAAACGAAAAGCAGATAACTTCTCTCTTGAAGGTCTCATGCCAGAGACCACGCGAACAAGAGACAGATATTCTTCAGACAATTCAAGAAAATGATTATGAATATAATCCGTATGCGAAAGAGTTTGGTATAAGTGTAGACAGCAAGCTTACATCAGTTGATGCTCGGGTTCTTCCTGCTCCATGGTTGAAATATCATGACACTGGAAGAGAGAAAGAGTACTTGCCACAAGTTGGTCAGTGGAATATGATGAACAAGAAAGTAATAAATGGAAGCACTGTAAGATACTGGGCATGTATCAATTTCTCAAGAAGTGTTCAAGAAAGCACAGCTCGTGGATTTTGCCAACAGTTAGTTCAGATGTGCCAAATCTCAGGCATGGAATTTAGCCAGGACCCTGTGATTCCTGTATATTCAGCAAAACCTGATCTAGTTAAGAAGGCTTTGAAGTATGTACATTCAGCTTCTCTAGAAAATCTTGGTGGCAAGGAGCTAGAGTTGCTTATTGCAATTCTTCCAGACAACAATGGCTCTCTATATGGTGATCTCAAAAGAATCTGCGAAACTGATCTCGGGTTGATTTCTCAGTGTTGTCTTACAAAGCATGTATTCAAGATTAATAGACAGTACTTGGCAAATGTTGCACTCAAAATCAATGTCAAGATGGGAGGAAGGAACACAGTGCTTTTGGATGCTTTAAGTTGGAGGATCCCATTGGTTAGTGACATTCCAACAATAATATTTGGAGCTGATGTAACTCATCCAGAATCCGGAGAGGACTCTTGTCCTTCCATTGCTGCTGTTGTAGCCTCACAGGACTGGCCAGAAGTAACAAAGTACGCAGGATTGGTTTGCGCGCAGCCTCATCGGGAAGAACTCATACAAGATCTTTTTAAATGCTGGAAAGATCCTCATCATGGTGTAGTTTATGGTGGCATGATCAGAGAGCTCTTACTCTCATTTAAGAAGGCAACTGGACAAAAACCACTGAGGATAATATTTTACAGGGACGGGGTAAGCGAAGGACAATTCTACCAAGTTTTGCTATATGAACTTGATGCCATTCGTAAGGCTTGTGCATCTTTGGAACCAAGTTACCAACCTCCAGTAACATTTGTTGTGGTTCAAAAACGTCATCATACTAGACTCTTCTCAAGCAATCATGATGATAGAAATAGCACTGACAAGAGTGGCAATATCTTACCTGGTACTGTGGTTGATTCTAAGATCTGTCATCCTACAGAATTTGACTTCTATTTATGCAGTCATGCTGGAATTCAGGGTACAAGTAGACCAGCTCACTACCATGTCTTATGGGATGAGAACAATTTCACTGCTGATGAAATTCAGTCTCTCACCAACAACTTATGCTACACTTATGCAAGGTGTACAAGATCTGTTTCAGTAGTGCCTCCTGCATACTATGCTCATTTGGCAGCATACCGAGCTCGATTCTACATGGAACCTGGTGCCACTGAGATTTCTAAAGCGCGTGGTGCAAGATCAAAAGATGGTTCAGTTCGGCCACTCCCAGCTCTCAAAGAAAAAGTCAAGAATGTCATGTTCTACTGTTGA 2733 0.4175 MKDPKEDEEKSRRVVEKSTELRRRGRRRNKQCSKADRLQEKGFDSQLVSSTCSKNLVFAARPGYGHLGTKCVVKANHFLADISASDLSHYTVKIIPEVRCRKTSKAIIAELVRVHKNTDLGMRLPVYDGGRNLYTAAMLPFTYKEFTILLTEDDESIGTTREREFMVVIKFAARVSMHQLRELLSGKQVDTPQEALTVIDIVLRELAAQSYVSIGRFLYSPDFRKPQQLGGGLESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVAQILGKDVHSKPLSDADRVKIKKALRGVKVEVTHRGSFRRKYRISGLTSQPTRELNFPLDEKMNMKSVVDYFQEMYGYTIKYPHLPCLQVGSQKKVNYLPMEACKIVGGQRYTKGLNEKQITSLLKVSCQRPREQETDILQTIQENDYEYNPYAKEFGISVDSKLTSVDARVLPAPWLKYHDTGREKEYLPQVGQWNMMNKKVINGSTVRYWACINFSRSVQESTARGFCQQLVQMCQISGMEFSQDPVIPVYSAKPDLVKKALKYVHSASLENLGGKELELLIAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKINRQYLANVALKINVKMGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGEDSCPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKCWKDPHHGVVYGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPSYQPPVTFVVVQKRHHTRLFSSNHDDRNSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYMEPGATEISKARGARSKDGSVRPLPALKEKVKNVMFYC* 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3962 910 SMART Piwi_a_2 553 874 IPR003165 GO:0003676
Amo01g3962 910 MobiDBLite consensus disorder prediction 1 35 - -
Amo01g3962 910 Gene3D paz domain 259 383 - -
Amo01g3962 910 CDD PAZ_argonaute_like 264 378 - -
Amo01g3962 910 SMART DUF1785_2 212 264 IPR014811 -
Amo01g3962 910 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 23 909 - -
Amo01g3962 910 Pfam N-terminal domain of argonaute 69 203 IPR032474 -
Amo01g3962 910 Pfam Mid domain of argonaute 462 539 IPR032473 -
Amo01g3962 910 ProSiteProfiles Piwi domain profile. 553 874 IPR003165 GO:0003676
Amo01g3962 910 SUPERFAMILY PAZ domain 260 419 IPR036085 GO:0005515
Amo01g3962 910 Gene3D - 443 616 - -
Amo01g3962 910 Pfam Argonaute linker 2 domain 407 451 IPR032472 -
Amo01g3962 910 SMART PAZ_2_a_3 269 401 IPR003100 GO:0005515
Amo01g3962 910 ProSiteProfiles PAZ domain profile. 265 379 IPR003100 GO:0005515
Amo01g3962 910 CDD Piwi_ago-like 423 873 IPR045246 -
Amo01g3962 910 PANTHER PROTEIN ARGONAUTE 10 23 909 - -
Amo01g3962 910 Gene3D - 622 910 IPR036397 GO:0003676
Amo01g3962 910 SUPERFAMILY Ribonuclease H-like 543 874 IPR012337 -
Amo01g3962 910 MobiDBLite consensus disorder prediction 1 22 - -
Amo01g3962 910 Pfam PAZ domain 269 395 IPR003100 GO:0005515
Amo01g3962 910 Pfam Argonaute linker 1 domain 213 262 IPR014811 -
Amo01g3962 910 Pfam Piwi domain 554 873 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3962 Amo-Chr1 113358751 113363853 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3962 54 910 Eukaryotic Initiation Factors Gene Family AT5G43810 74.220 0.0 1386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3962 K11593 - gmx:100808457 1664.43