Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3961 ATGATTCTCCAGTCTTCAAAATCAAAAGAGATGATCACCATGAACCAAAACGAAATGGTGGTGGATGAAGGCCTCCTTCACGATATCATGCTTAACTCACCCTCCCTCCACCACCTTCCTCAAACCACGCACTACAATTACAATTACAATTATAACCCCTTCGATGATACTACCGTCTCCTGGATAAACGACGCCGTTTCTTCTCCCTCTCAGTCTCAGCTCACTACCACCGCCCTTCACCTACCACCACCACCGCCGCCGCCACCACTGATTGATCATCAACAAACGGAGTTGCTGCTGCCAACCGAACAGCAACAGCAAGTGGAAGAAGACTCTGCGATAAGGCTGGTCCACATGCTCATCTCATGCGCCGATTCTCTCCAGCGAGGCCACGTGGCACACGCCGCTTCCCTCATCGACGCCATGCAATCACTCCAAAGACACGTCACCACCGCCTCCGCCATCGGCAAGGTCGCCGCTCACTTCATCGGCACCTTAACACGCCGCATCTTCGCTCCTCCCCTCACCGAACGCCACGGCGGAGTCGGTGCAGTCGCCAACGACGAAGGAGGCGTACTTTACCATCATTTCTACGAGGCATGCCCTTATCTCAAGTTCGCTCACTTCACCGCCAACCAGGCGATCCTCGAGGCCTTCAGCGGCCACTCCTCCGTCCACGTCGTCGACTTCCACCTCGCGCATGGACTCCAGTGGCCGCCACTCATCCAGGCGCTCGCACTTCGCCCAGGCGGTCCCCCCTCCCTCCGCATCACCGGCATTGGCCCTCCCTCTCCGGACCGCCGCGATGCCCTCCGCGAAACCGGCATCCGCCTCGCCGAACTTGCCCGCTCCGTCAACGTCCGGTTCGCTTTCCGAGGAGTCGCTGCGTCAAGGCTTGAGGACGTGGAGCCGTGGATGCTACAGGTGCGGCAGGAGGAGGCGGTGGCGATCAACTCCGTCATGCAGCTCCACCGACTCCTAGGATCCGATTCGGGAATCGACTCGGTCCTGGGTTGGATCCGGAGGTTAAACCCTAAGATCGTAACCGTGGTTGAACAAGAAGCGAATCACAACCAGACCGGGTTCTTGGAACGATTCACGGAAGCGCTGCATTACTACTCGGCCGTTTTCGACTCGCTAGAGGCTTGCCCAAACGAACCGGATAAGTCGCTAGCCGAAATGTACCTGGAGAGAGAGATTGGCAACGTGGTTTGTTGTGAGGGGCCGGCTCGGGTGGAGAGGCATGAACCGCTGGCCCAATGGAAGGCCCGGTTGGAGAAATCAGGGTTTAAGTGCGTGGGCCTGGGCTCAAATGCGTTAAGGCAGGCGAGCATGTTATTGAGCTTGTTCTCAGCTGAGGGGTACTGCGTTGAAGAGAAGGAAGGATGTTTGACTTTGGGTTGGCATGGGAGGCCCCTCATTGCTGCTTCGGCTTGGCAACCCTTTCCCCTCACCCCTGACCCACACCCGCACCCACATTGGCTTCCTTAG 1491 0.5775 MILQSSKSKEMITMNQNEMVVDEGLLHDIMLNSPSLHHLPQTTHYNYNYNYNPFDDTTVSWINDAVSSPSQSQLTTTALHLPPPPPPPPLIDHQQTELLLPTEQQQQVEEDSAIRLVHMLISCADSLQRGHVAHAASLIDAMQSLQRHVTTASAIGKVAAHFIGTLTRRIFAPPLTERHGGVGAVANDEGGVLYHHFYEACPYLKFAHFTANQAILEAFSGHSSVHVVDFHLAHGLQWPPLIQALALRPGGPPSLRITGIGPPSPDRRDALRETGIRLAELARSVNVRFAFRGVAASRLEDVEPWMLQVRQEEAVAINSVMQLHRLLGSDSGIDSVLGWIRRLNPKIVTVVEQEANHNQTGFLERFTEALHYYSAVFDSLEACPNEPDKSLAEMYLEREIGNVVCCEGPARVERHEPLAQWKARLEKSGFKCVGLGSNALRQASMLLSLFSAEGYCVEEKEGCLTLGWHGRPLIAASAWQPFPLTPDPHPHPHWLP* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3961 496 Pfam GRAS domain family 116 480 IPR005202 -
Amo01g3961 496 PANTHER OS05G0574900 PROTEIN 58 484 - -
Amo01g3961 496 ProSiteProfiles GRAS family profile. 107 480 IPR005202 -
Amo01g3961 496 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 58 484 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3961 Amo-Chr1 113355591 113358197 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3961 110 480 GRAS Transcription Factor Family AT1G14920 52.941 2.48e-137 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Amo01g3961 GRAS 4.6e-123 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3961 K14494 - jre:109006296 567.385