Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3943 ATGAAAGGGGAAGTGCAGCTGCAACCACCGGTGGTTCAGCAGAACCTTAGTGATTCCGAGCCTTTACTCGAAAACCAGGAGGAGGATGTGTCCCCTGTAAGCTCCACTGAGATCAAAGATGAGGACTTGGAGGCTGGTTCACTCCCTTGCTGTCGAATTTGTCTTGAAAGCGATTCCGACCCAGAGGATGAATTGATATCTCCATGCATGTGCAAAGGGACCCAACAATTTGTCCACCGTTCATGTCTTGATCACTGGCGCTCGGTAAAGGAAGGATTTGCCTTCTCTCACTGCACTACTTGCAAAGCCCAATATCATCTCAGGGTTGAATTGTTTGAGGACAATTCTTGGCGTAAAGCAAAGTTTAGACTCTTTGTTGCAAGAGATGTTTTCCTTGTTTTTCTGGCTGTACAGACCGTAATTGCGGGTATAGGTGGCTTTGCATACATCATGGACAAGGATGGGAACTTCAGGAACTCCTTTGATGATGGTTGGGATAGGATACTGTCAAAACATCCTATACCATTCTATTATTGTATTGGAGTGCTGGCTTTCTTTGTACTGATCGGGTTTTTCGGTCTCATACTGCATTGCACCTCCCTCAACAGCAATGACCCCAGAATGGCTGGTTGTCAGAATTGTTGTTATGGATGGGGCATCCTTGATTGCTTTCCTGCATCAATGGAGGCTTGTTTTGCCCTTGTTGTGGTTTTCGTAGTCATCTTTGCTATTCTCGGCATTGCTTATGGTTTCCTTGCAGCCACCATGGCAATCCAAAGAATTTGGCAAAGGCACTACCATATTCTCACCAAAAGGGAGCTTACAAAGGAATACGTAGTAGAGGATCTATGTGGGACTTATGTCCCACCAAAGTTGGATCCAGAACATGAAGCTCGCTTGAAAATGCTCAAGCTTTTGTAA 921 0.4528 MKGEVQLQPPVVQQNLSDSEPLLENQEEDVSPVSSTEIKDEDLEAGSLPCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQYHLRVELFEDNSWRKAKFRLFVARDVFLVFLAVQTVIAGIGGFAYIMDKDGNFRNSFDDGWDRILSKHPIPFYYCIGVLAFFVLIGFFGLILHCTSLNSNDPRMAGCQNCCYGWGILDCFPASMEACFALVVVFVVIFAILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYVVEDLCGTYVPPKLDPEHEARLKMLKLL* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3943 306 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 306 - -
Amo01g3943 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 115 IPR013083 -
Amo01g3943 306 Pfam RING-variant domain 51 101 IPR011016 GO:0008270
Amo01g3943 306 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 306 - -
Amo01g3943 306 SMART ringv_2 50 102 IPR011016 GO:0008270
Amo01g3943 306 ProSiteProfiles Zinc finger RING-CH-type profile. 43 108 IPR011016 GO:0008270
Amo01g3943 306 SUPERFAMILY RING/U-box 48 106 - -
Amo01g3943 306 MobiDBLite consensus disorder prediction 1 38 - -
Amo01g3943 306 CDD RING_CH-C4HC3_MARCH 51 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3943 Amo-Chr1 113130401 113133970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3943 1 306 C3H Transcription Factor Family AT1G11020 79.751 7.06e-172 477