LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo01g3942	ATGGTTTCAATGTTCATGTGCACTAGTATTAATGGTGAAGAGAATCAAGAGATAGAATTTTCAAGGGATGGCAGTCACTACAGCCTCTCCAATGCGGTCTTGCCTTCTCTTGGTGCCAGAAGTCACCGCAGAGTCAAGCTTCGACGCTTCACTGTTTCTCCTTATGACCGTCGTTACAGGATATGGCAGACTTTCCTGGTCATCCTTGTTATCTACACAGCTTGGGTATCACCATTTGAATTTGGTTTCCTTAAGAAACCAGAAGCACCCCTTTCCTATACAGATAATGTTGTCAATGCACTCTTTGCTATGGATATAATTCTCACCTTCTTTGTAGCTTATATTGACAAAGCTACTTATTTACTAATTGATGATCGAAAACAAATTGCTTGGAAATACACAAGAACTTGGCTTGCATTTGATTTGATCTCTATCATTCCTTCAGAGCTTGTTAGAAAGCTGTCACCTGCACCTCTGCAGACTTATGGCCTATTCAACATGCTCCGTCTATGGCGTCTTCGAAGAGTTAGTGCATTGTTTTCAAGGTTGGAAAAGGACAAAAGCTATAACTATTTTTGGGTTCGATGTGCCAAACTTATCTGTGTTACCCTATTTGCTGTACATTGTGCTGCATGCTTTTATTATCTTATCGCGGCTCGTTATCGTGATCCCAAAAGGACATGGATTGGAGCAACAATGGGAAATTTTCTTCAGAAGAGCTTGTGGACAAGATATGTTACATCTATTTATTGGTCAATTACTACCTTAACAACTGTTGGCTATGGAGATCTGCATCCAGTTAATTCAAGAGAGATGGTCTTTGACATCTTTTACATGCTTTTTAATTTGGGACTTACTGCATATTTGATTGGTAACATGACTAACTTAGTTGTCCATGGAACAAGCCGAACCCGAAAATTTAGAGACACCATACAAGCTGCCTCAAGTTTTGCTCAAAGGAATCAATTACCTATTCGTTTGCAAGACCAGATGCTTGCTCATTTGTGTTTGAAGTTTAGAACAGACTCCGAAGGGTTACAACAACAAGAGACAATTGATTCCCTTCCTAAAGCCATCAGATCAAGCATTTCACATTATCTCTTCTATTCTCTGGTGGATAAAGTCTATTTATTTCGAGGCGTTTCAAATGATTTACTCTTTCAATTGGTTTCAGAGATGAAAGCAGAGTATTTTCCTCCTAAAGAAGATGTAATCTTACAGAATGAAGCTCCAACTGATTTCTACATACTAGTCACTGGTGCTGTGGAATTGGTAGTTCTTAAAAATGGCGTTGAGCAGGTTGTTGGAGAGGCAAATACAGGTGATCTTTTTGGTGAGATTGGTGTGCTTTGCTATAAGCCACAGCTCTTTACGGTTCGGACAAAGCGATTAAGCCAGCTTTTGAGACTAAACCGTACTGCTTTTCTAAATATTGTCAAGGCTAACGTAGGAGATGGAAATATTATTATGAACAATCTTCTTCAGCACTTAAAAGAACTAAATGACCCTATCATGGAGGGAGTTTTGGTGGAGACTGAGAATATGTTAGCTCGTGGTAGAATGGACCTACCAGTTGGTCTTTGTTTTGCAGCAGCAAGAGGAGATGACTTGTTGTTACATCATTTGTTAAAACGAGGATTGGATTCAAAAGAATCAGATAGAAATGGAAGAACAGCTTTGCATATTGCAGCATCTAAAGGAAGTGAGAATTGTGTCATGCTTTTACTGGATTATGGAGCGGATCCCAATATTAGAGACTCTGATGGCAGCGTATCACTATGGGAAGCCATATTGGGTGGACATGAATCAGTAAGCCAGCTACTATTGGAAAATGGTGCTAACTTGAAAAGTGGTGATGTTGGTCAATTTGCATGCATCGCTGCTGAACAAAACACCCTCAACTTGCTCAAGGATATAGTGCGCTATGGTGGAGATGTCACGCTCCCTAGCACCACCTCCGGAACCACAGCTCTACATGTTGCAGTCTCTGAAGACAACGTAGAAGTTGTGAAGTTCTTGTTGGATCTTGGTGCCGACATTGATAAACCAGATAAGAACGGTTGGACACCAAGAGATCTAGCAGTCCAGCAAGGGCATCAAGACATCATAGCCATTTTTGAGTCTATTAAGGAGCCTAAGAATTATCAACCTTTGGACCGTATTCCTGAGAAGGAAGGTAAGATAAAGAAGTTCCTTGGAAGATTTACAAGTGAACCAGCAATTCCTCTACCCCAAGAGAGCACATTTAGGGGTTCGGATGGGTTTAGGAGTTCGGACAGGTCTTGGAGCCAAAGCCGCCCAAGGCGGAGAAGCAGCAATAACTTCCACAACTCTTTGTTTGGGATAATATCAGCAGCAAACAAAGGGGAAAAGGACACGCTCTTTTATGTGAATGAAAATGGTAATGCAAAGAATGGTATGAAGAGTAGAGAATGGCCAACCAGAGTGGTGGTTAGTTTCCCTGAAAAGGGTGAGGCTGGTGGGAAACTTGTGTTGCTACCTGGAAGCTTTCAGGAGTTACTTGATATTGGGGCTGAGAAGTTTGGTGTGCGTCCTGCTAAGGTTCTATGCAAAGATGGGTTTGAAATTGAAGATATAGAGGTTATTAGGGATGGGGATCATCTTGTTTTTGAGAGTGCTGCTCAAAACTCTGACTATCCTACACCCACAATCGGTGTGCAACCGTAG	2688	0.4133	MVSMFMCTSINGEENQEIEFSRDGSHYSLSNAVLPSLGARSHRRVKLRRFTVSPYDRRYRIWQTFLVILVIYTAWVSPFEFGFLKKPEAPLSYTDNVVNALFAMDIILTFFVAYIDKATYLLIDDRKQIAWKYTRTWLAFDLISIIPSELVRKLSPAPLQTYGLFNMLRLWRLRRVSALFSRLEKDKSYNYFWVRCAKLICVTLFAVHCAACFYYLIAARYRDPKRTWIGATMGNFLQKSLWTRYVTSIYWSITTLTTVGYGDLHPVNSREMVFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAQRNQLPIRLQDQMLAHLCLKFRTDSEGLQQQETIDSLPKAIRSSISHYLFYSLVDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVELVVLKNGVEQVVGEANTGDLFGEIGVLCYKPQLFTVRTKRLSQLLRLNRTAFLNIVKANVGDGNIIMNNLLQHLKELNDPIMEGVLVETENMLARGRMDLPVGLCFAAARGDDLLLHHLLKRGLDSKESDRNGRTALHIAASKGSENCVMLLLDYGADPNIRDSDGSVSLWEAILGGHESVSQLLLENGANLKSGDVGQFACIAAEQNTLNLLKDIVRYGGDVTLPSTTSGTTALHVAVSEDNVEVVKFLLDLGADIDKPDKNGWTPRDLAVQQGHQDIIAIFESIKEPKNYQPLDRIPEKEGKIKKFLGRFTSEPAIPLPQESTFRGSDGFRSSDRSWSQSRPRRRSSNNFHNSLFGIISAANKGEKDTLFYVNENGNAKNGMKSREWPTRVVVSFPEKGEAGGKLVLLPGSFQELLDIGAEKFGVRPAKVLCKDGFEIEDIEVIRDGDHLVFESAAQNSDYPTPTIGVQP*	896

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo01g3942	895	Pfam	KHA, dimerisation domain of potassium ion channel	815	877	IPR021789	-
	Amo01g3942	895	ProSiteProfiles	Ankyrin repeat profile.	555	587	IPR002110	GO:0005515
	Amo01g3942	895	ProSiteProfiles	KHA domain profile.	815	895	IPR021789	-
	Amo01g3942	895	CDD	CAP_ED	377	482	IPR000595	-
	Amo01g3942	895	MobiDBLite	consensus disorder prediction	750	770	-	-
	Amo01g3942	895	Gene3D	-	524	708	IPR036770	-
	Amo01g3942	895	SMART	ANK_2a	555	584	IPR002110	GO:0005515
	Amo01g3942	895	SMART	ANK_2a	653	682	IPR002110	GO:0005515
	Amo01g3942	895	SMART	ANK_2a	686	715	IPR002110	GO:0005515
	Amo01g3942	895	SMART	ANK_2a	522	551	IPR002110	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo01g3942	Amo-Chr1	113123672	113130424	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo01g3942	11	877	Ion Channels	AT2G25600	62.385	0.0	1095

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo01g3942	K21867		-	gmx:100819491	1383.24

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