Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo01g3933 | ATGGACGAAGCTTCGTTGATGCGCAACACCGATTGCGTTTATTTCTTGGCATCTCCCCTCACTTGCAAGAAGGGAGCTGAATGCGAGTATCGGCATAATGAGATTGCGAGGCTTAACCCTAGGGATTGCTGGTACTGGTTATCTGGCAGTTGCCTTAATCCAACATGTGCTTTCAGGCACCCTCCATTGGATGGCCAGACTGGAGTTTCATCTGAGCCAACACAGTCTGCTGTGCCTGCAAATAAGACAATGGTTCCCTGTTATTTTTTCTTCTATGGATATTGCAATAAAGGCGACAGATGCTCATTTTTGCATGGGCATGATGAGAGCCATTTCACTGTAAAGCCTGTAAAGAATGACAAGGGAGGCACTGATCCACCCAACCTAGAGAATAAGGTGTTGTCAGGAACTGCCCCATCAACAACTGAAACTCATTCGAACCCATCGTTAACTGCCCCAAAGGCTTTGCCCACTTTCAAGCCTCCACCTAAGGAAGATCTTCAACTATCCTTACCAAAAAATGTTAAACAGCAAGTCTCCGTATCCAGAAGAAGATTTGTTGATAACATCTCTCAACGATGCAGTGAGCAGGGTTCAGAGGAGCAAGTAAATGGTCACATCGAGCCTGATGAACGTTGGGAATCATCATCCCCTGGATTTGATGTTCTTGTTCATGATGAATCGGCAAACTTGGGCTATGAGGAGGATCCTGAATATCTTCCTGATGGGGAACATGAGGAACTGAATGAACAATACTTGGGGTATGAATTTGAAACCCAGTTGAGTATGAAATATAGAAAAGCCACTAAACGCCAGTTTCATTCATCTAATGACTCCAGGAGACCAGTTTTCAAGCAAAGGAGATTTGTTCACGAGTCCTCTACATTTTCAGGACCCAAGAGCCTTGCAGAAATTAGAGAAGAGAAGAAAAAGGCTGCAGGAAGTTTTCACTGCAAAAGCACATCACCTGATTTTCAGGACCCCAAACCTCTTAGTGAAATTCTCAAGGGCAAAAGGAGTGTGGACGGAGTTGGAGATGTCAATGTCTGCAGCAACTGA | 1059 | 0.4466 | MDEASLMRNTDCVYFLASPLTCKKGAECEYRHNEIARLNPRDCWYWLSGSCLNPTCAFRHPPLDGQTGVSSEPTQSAVPANKTMVPCYFFFYGYCNKGDRCSFLHGHDESHFTVKPVKNDKGGTDPPNLENKVLSGTAPSTTETHSNPSLTAPKALPTFKPPPKEDLQLSLPKNVKQQVSVSRRRFVDNISQRCSEQGSEEQVNGHIEPDERWESSSPGFDVLVHDESANLGYEEDPEYLPDGEHEELNEQYLGYEFETQLSMKYRKATKRQFHSSNDSRRPVFKQRRFVHESSTFSGPKSLAEIREEKKKAAGSFHCKSTSPDFQDPKPLSEILKGKRSVDGVGDVNVCSN* | 353 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo01g3933 | 352 | PANTHER | ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING | 262 | 340 | - | - | |
| Amo01g3933 | 352 | MobiDBLite | consensus disorder prediction | 115 | 167 | - | - | |
| Amo01g3933 | 352 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32-LIKE | 262 | 340 | - | - | |
| Amo01g3933 | 352 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32-LIKE | 1 | 261 | - | - | |
| Amo01g3933 | 352 | SMART | c3hfinal6 | 7 | 34 | IPR000571 | GO:0046872 | |
| Amo01g3933 | 352 | SMART | c3hfinal6 | 81 | 107 | IPR000571 | GO:0046872 | |
| Amo01g3933 | 352 | SMART | c3hfinal6 | 39 | 62 | IPR000571 | GO:0046872 | |
| Amo01g3933 | 352 | ProSiteProfiles | Zinc finger C3H1-type profile. | 6 | 35 | IPR000571 | GO:0046872 | |
| Amo01g3933 | 352 | MobiDBLite | consensus disorder prediction | 193 | 216 | - | - | |
| Amo01g3933 | 352 | PANTHER | ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING | 1 | 261 | - | - | |
| Amo01g3933 | 352 | MobiDBLite | consensus disorder prediction | 130 | 153 | - | - | |
| Amo01g3933 | 352 | Pfam | Zinc-finger containing family | 8 | 64 | IPR041686 | - | |
| Amo01g3933 | 352 | ProSiteProfiles | Zinc finger C3H1-type profile. | 81 | 108 | IPR000571 | GO:0046872 | |
| Amo01g3933 | 352 | Gene3D | - | 72 | 133 | - | - | |
| Amo01g3933 | 352 | Gene3D | - | 2 | 63 | - | - | |
| Amo01g3933 | 352 | Pfam | RNA-binding, Nab2-type zinc finger | 86 | 106 | - | - | |
| Amo01g3933 | 352 | SUPERFAMILY | CCCH zinc finger | 84 | 111 | IPR036855 | GO:0046872 | |
| Amo01g3933 | 352 | ProSiteProfiles | Zinc finger C3H1-type profile. | 37 | 63 | IPR000571 | GO:0046872 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo01g3933 | Amo-Chr1 | 113004444 | 113007344 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C3H | Amo01g3933 | zf-CCCH_3 | 2.5e-11 | CL0537 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo01g3933 | - | - | adu:107469835 | 538.88 |