Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3924 ATGGAACGGCGTCGAAATCCCACTAGCTACCCTCAAAACAATGCTTTCTCTTCTTATCCCTTCTCCGATAATGCATACAGCACTTCTTCTGGCCCCGCGCCACGTGGCAAGGGTCGTGCCGGTTACTCAACCGCCCCTTCCGGTGCTCGGGAACACGACACCACCTCCGGCGCCGGCGGGGGAATCAACTTCGAGGCGTACGAATCTGTACCGGTGGAGGTTAGCGGCGACGAAGTTCCCCTGCCGGTGGAATCGTTCGTGGAAACCGATTTCCACCAAGTTCTGAAGACGAACATCGAGCGGTGCAAGTACGTGAAGCCTACGCCGATTCAGCGCCACGCCATTCCCATTGCTTGCGCCGGCCGTGACTTGATGGCCTGCGCGCAGACTGGGTCCGGTAAAACGGCGGCGTTTTGCTTCCCGATCATTTCTGTTATTCTTAAGAATCGTCGTCCGGGGTTTACTTCTGTGGTTCGTGATCGTGGCGGCACTGTTTCATATCCAACGTCACTTATTCTTTCTCCTACTAGAGAATTATCTTGCCAAATACATGATGAAGCGAAGAAGTTTGCTCATCAAACTGGAGTGAAGGTTGTTGTTGCTTATGGTGGAGCTGCAATAACTCAGCAGGGTGTTGATATACTTGTTGCTACTCCTGGGAGGTTGGTGGATATCATTGAAAGAGGGAGGGTTTCTTTGACAAGGATAAAGCTTCTTGCTTTGGATGAGGCTGATCGAATGTTGGACATGGGGTTTGAGCAGCAGATACGCAAGATTGTTGAGCAGATGGACATGCCTCCACCTGGTGTTAGGCAAACTATGCTTTTCAGCGCTACATTCCCTGATGATATTCAGAAGCTTGCATCTGACTTTCTATCAAACTACATATTCCTATCTGTTGGAAGGGTTGGTTCTAGCACTGAATTGATTGTGCAGAAAGTTGAATATGTTGAGGATAATGAAAAGATTAACCATCTAATGGATCTACTCCATGGTCAAAATGCACGTGGCGCCAACGGGAAGCCTGCTTTGACTCTTGTATTTGTTGAAACAAAGAGGGGAGCGGATAATTTAGAATCTACCTTGACGAGAAAAGGGTTTCGTGCTATTGCAATACATGGTGACAAAGTTCAAATGGAAAGGGAACGAGCTTTAAGATCCTTCAAAAAAGGTGCGACTCCTATCATGGTGGCGACAGATGTTGCTTCCAGAGGTTTGGATATCCCGCATGTGGCCCATGTCATCAATTATGATTTGCCAAGAAACATTGATGACTATGTTCACAGAATTGGCAGAACTGGCCGTGCTGGCAAATCTGGTTTTGCCACTGCCTTCTTCAGCTACAAGAACAATCATCTTGCAAAGCCTCTTGTTGACCTTTTGCAGGAAGCAAAGCAAGAAATTCCTTCTTGGCTGAGCCAATATGCTGGTGAGTCTTCATCATATGATGGCACTGGTGGTAGCCATCCATCTCAGCAGTATGGTGGTCGTGACTTCCGAAATGTTACTGAACCTGAAGTGGAGAATTATGACAACCACTCCACTACTTTTGGCGATTCATATAATGCTGATTATACATTTGACATAAAAGACTCCAATGAATATGCTGATTCATCATCTTATGAGATGGCAAATTCAGTTCCTCCTGCTACCAGTTGTCATTATACTTATGCCAATACTGACTTGTATGGAGGTGGCAACGTTGAAGATGGTCCTGGAGGTTATGCATCGATTGTTGCAACTGGATGGGACTAG 1755 0.4678 MERRRNPTSYPQNNAFSSYPFSDNAYSTSSGPAPRGKGRAGYSTAPSGAREHDTTSGAGGGINFEAYESVPVEVSGDEVPLPVESFVETDFHQVLKTNIERCKYVKPTPIQRHAIPIACAGRDLMACAQTGSGKTAAFCFPIISVILKNRRPGFTSVVRDRGGTVSYPTSLILSPTRELSCQIHDEAKKFAHQTGVKVVVAYGGAAITQQGVDILVATPGRLVDIIERGRVSLTRIKLLALDEADRMLDMGFEQQIRKIVEQMDMPPPGVRQTMLFSATFPDDIQKLASDFLSNYIFLSVGRVGSSTELIVQKVEYVEDNEKINHLMDLLHGQNARGANGKPALTLVFVETKRGADNLESTLTRKGFRAIAIHGDKVQMERERALRSFKKGATPIMVATDVASRGLDIPHVAHVINYDLPRNIDDYVHRIGRTGRAGKSGFATAFFSYKNNHLAKPLVDLLQEAKQEIPSWLSQYAGESSSYDGTGGSHPSQQYGGRDFRNVTEPEVENYDNHSTTFGDSYNADYTFDIKDSNEYADSSSYEMANSVPPATSCHYTYANTDLYGGGNVEDGPGGYASIVATGWD* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3924 584 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 452 IPR027417 -
Amo01g3924 584 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 115 298 IPR014001 -
Amo01g3924 584 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 322 476 IPR001650 -
Amo01g3924 584 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 37-LIKE ISOFORM X1 51 512 - -
Amo01g3924 584 SMART ultradead3 103 313 IPR014001 -
Amo01g3924 584 Pfam DEAD/DEAH box helicase 108 287 IPR011545 GO:0003676|GO:0005524
Amo01g3924 584 SMART helicmild6 356 437 IPR001650 -
Amo01g3924 584 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 84 112 IPR014014 GO:0003724
Amo01g3924 584 MobiDBLite consensus disorder prediction 7 31 - -
Amo01g3924 584 CDD DEADc_DDX3_DDX4 85 304 IPR044763 GO:0003724|GO:0005524
Amo01g3924 584 Gene3D - 44 299 IPR027417 -
Amo01g3924 584 Gene3D - 300 480 IPR027417 -
Amo01g3924 584 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 51 512 - -
Amo01g3924 584 Pfam Helicase conserved C-terminal domain 321 437 IPR001650 -
Amo01g3924 584 CDD SF2_C_DEAD 310 446 - -
Amo01g3924 584 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3924 Amo-Chr1 112823104 112825797 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3924 84 453 Eukaryotic Initiation Factors Gene Family AT3G13920 33.245 1.19e-55 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3924 K11594 - gmx:100791226 712.605