Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3920 AACATCTCTCATAAACCCTGCAGCCCCTTTTTGTGTCTTCGAAAAACCCTAGCCCCCCTTTCTCCCCCTCTCTTCCTTCAATCGAAAATGACAGGAGAAGCTGTGAACCCAAAAGCTTACCCTTTGGCAGATGCTCAACTCACCATAACCATACTCGATCTTGTTCAGCAAGCTGCCAACTACAAACAGCTCAAAAAGGGTGCTAATGAAGCCACTAAGACCCTGAACAGGGGTATTTCGGAGTTTGTTGTTATGGCGGCTGATACTGAGCCGCTTGAGATTCTCCTCCACCTTCCTCTTCTTGCTGAGGATAAGAACGTTCCCTATGTCTTTGTCCCATCAAAACAAGCACTTGGGCGAGCTTGTGGTGTCACCCGGCCAGTGATTGCATGTTCTGTGACAACAAATGAAGGAAGTCAGTTGAAATCACAGATACAGCAACTAAAGGATGCTATTGAGAAGCTGTTGATCTAA 474 0.4641 NISHKPCSPFLCLRKTLAPLSPPLFLQSKMTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3920 157 Coils Coil 138 157 - -
Amo01g3920 157 ProSitePatterns Ribosomal protein L7Ae signature. 102 119 IPR004037 GO:0042254|GO:1990904
Amo01g3920 157 PRINTS High mobility group-like nuclear protein signature 50 65 IPR002415 GO:0003723|GO:0005730
Amo01g3920 157 PRINTS High mobility group-like nuclear protein signature 67 77 IPR002415 GO:0003723|GO:0005730
Amo01g3920 157 PRINTS High mobility group-like nuclear protein signature 37 50 IPR002415 GO:0003723|GO:0005730
Amo01g3920 157 PRINTS High mobility group-like nuclear protein signature 111 123 IPR002415 GO:0003723|GO:0005730
Amo01g3920 157 SUPERFAMILY L30e-like 35 155 IPR029064 -
Amo01g3920 157 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 52 140 IPR004038 -
Amo01g3920 157 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 30 157 - -
Amo01g3920 157 Gene3D - 28 157 IPR029064 -
Amo01g3920 157 PANTHER NHP2-LIKE PROTEIN 1 30 157 - -
Amo01g3920 157 PRINTS Ribosomal protein L7A/RS6 family signature 83 96 IPR018492 -
Amo01g3920 157 PRINTS Ribosomal protein L7A/RS6 family signature 99 109 IPR018492 -
Amo01g3920 157 PRINTS Ribosomal protein L7A/RS6 family signature 109 123 IPR018492 -
Amo01g3920 157 PRINTS Ribosomal protein L7A/RS6 family signature 64 78 IPR018492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3920 Amo-Chr1 112792059 112794293 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3920 64 153 Cytoplasmic Ribosomal Protein Gene Family AT2G47610 28.889 9.36e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3920 K12845 - csv:101222939 239.195