Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3916 TGTATCTACTATTTAAGAACTGAATTTTGTAGCTATGGTTCCTACTACCGTTTTAACCATTCCCATGATCGAATCGAAGCTGTTGGTGTTGTTGCTAGGACTAGAGGAAGGGAGTACTCGGAGCGAATTGGCCAGCCTTTGTGTCAGGTCTTAGTTGTTGCAGCTGCACTTCATTGGGATTCTGAGCACGACCTGGCTATCCGGAAGATAATCGACTATAGGATGGGTCGGCAGCTCCAACAGATGCTGGATGATGTTTGTCACGGCCGGGACCAACGGACGCGCTGGCTCCGATCGGAGGTAAAGAAGGGCTTGTTCGCTCATTAG 327 0.4924 CIYYLRTEFCSYGSYYRFNHSHDRIEAVGVVARTRGREYSERIGQPLCQVLVVAAALHWDSEHDLAIRKIIDYRMGRQLQQMLDDVCHGRDQRTRWLRSEVKKGLFAH* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3916 108 PANTHER ZINC FINGER C-X8-C-X5-C-X3-H TYPE FAMILY PROTEIN-RELATED 1 53 - -
Amo01g3916 108 PANTHER PROTEIN PHOSPHATASE RELATED 1 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3916 Amo-Chr1 112740577 112743789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3916 1 49 C2H2 Transcription Factor Family AT5G18550 55.102 3.83e-13 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo01g3916 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3916 - - csin:114302989 68.5514