Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3903 ATGGCTTCTAAATCCCCCATTCTCATTGTTCTGCTCTTTCTGTCTTCTATTCTACTGCTACACTCATCACTTGCAGATGCAGGTGATGGAATAACCAAGATTGAGTTGGGTCATTCCCTCTCTCCAAAAGGAAACCAATCTTCATCATGGTTATCAAGTTCTGGACATTTTGCATTTGGATTTTACCCTCATGCTCAAGGCTATGGCTATGCTGTTGGTATATGGCTGCTTGGTGAGCCTGACATCACTCTAGTATGGACTGCTAACCGCAACGATCCGCCGCTACCTTCTTCCTCCACCTTACTTTTGACCATTGATGGCTTGGTTCTTCAACAAGGACAAAAGATTACTAATAATGTCACAGGGGCTTCTATGGCATCCATGCTGGATTCCGGAAACTTTGTAATCTATGATGATTCACATGTTGTTGTGTGGCAAAGCTTTGATCATCCAACCGATACCATTTTAGGAGGTCAGAACTTAACTGCAGCAAACAGATTGGTGTCTAGTTTGTCCAAAACAGATCATTCCACTGGACTTTTCTATCTTATCATGCAAGAATCGGATAGCAACCTTGTTGCTTATCCCCTCAAAACCTTACCATACGCTGAGGATCACTACTGGGCTGAGATTGACAATGCTACTACCGGTTCGGTGCAGCTGAGTCTTAACACGGAAGGATTTCTTTGCCTAAGAGAGCATCAATGTTTTGTCAACAACACAAACTTGTTGAAAAATAGCAATTCTCAGAAACAGAACACAACCTCAATATACCGGGCAACATTTGATTTTGATGGGGTTTTCAGATTGTATGAGCACCAATTTGATGGTGAGGGAAATAGAAGGCAATTAAGTGTTCAAATTAGGTGGGAAGCCTTGCATGATAAATGCCAAATCAATGGTTTTTGTGGCTTCAACAGTTACTGCTCCAACACCAATATGTGTCACTGTTATCCTGGTTTCGTCCCCATCAGCAACAATGGCATGTTTCTGGAATGCAAACTGAACTACAGCAAAGACGAATGTCAATCTAATCCTGACCCATCTTCGCTGTACGATGTTACTCTTTTGGAGCACATGTCATGGAGTGATTTCCCATATTTGGTTAAAAAAGAAACAACAATGGAAGCATGTGAGGAATCTTGCAAGGAAGATTGTGATTGTGGGGGAGCATTGTATGCAAATAATGGTGGTATCTGCAGCATATACAGGCTTCCACTCAGATATGGCAGAAAGGTTCCAAATGCATCAGACACAGCCACAGCCATTTTCAAAGTTCCTTATCATTCAGGATTTCTAATTAACCAAACACATCTAGACCCGGATTCCCATGTTGTTGTTGATAACAAGAGAAGCCTAATACTGATTCTATCCTCTTCTTTGGGTTCTGTTACTTTGCTCTGTGTGATCATTGCTGTCTCGGTTTTCTTCAATTATAGGCATCATGTTTATAGTTATGCAAAGTTGTCTGCAAGCTCAAACCTGGGAATCACCAAGGAATGTTCATTGCGCTCGTTTTCCTTTGACGAACTTGTGGAAGCAACTAGTGGCTTCACGGAAGAGATAGGAAGAGGGTCTTATGGAGCAGTTTATAAAGGAACAATAACAGGTGATGGTAGTAACAAAACCGTTGCTGTGAAGAGACTAGAGAGGATTGCTGATGATGAAGGAGAGAGGGAATTCCGAGCTGAAGTTACTGCCATTGCTCGAACTCACCATAGGAATCTGGTTAAGCTTGTTGGGTATTGTATTGAAGGGTCAAGGAAGCTTCTTGTTTATGAATATGTTAGCAATGGCTGCCTCGCGAATCTTCTGTTTAAGGGTAAGAATCATCATCATCATCATCATGATCAGGCACTTCCATGGAAAGAGAGGATTAAAATTGCATTGGATGTAGCCAGAGGAGTGCAGTATCTGCATGAAGAGTGCGGGGTTCGAATCGTCCATTGCAATCTTAAGCCACAAAATATACTGATTGATGAAGCATGGACAGCAAAGATATCTGATTTTGGATTAGCACGGCTTTTGAAGCAGCCTCAACAACCAGAGTTTCTTACTGATGATGAGGTAAGAAGCAGTTACTTGGCACCTGAATGGAAGAATGAGGCATCACCATCTTTATCTTCATGTTCATCTCCATTGGTGTCTGTGAAAGTTGATATTTACAGCTATGGGGTTGTGGTGTTGGAGATAGTGTGCCGCAGAAGAAGTATAGATGTAAACGTGAAGTGTCCAGAGGAGGTTCTTCTTTCAAGTTGGGTGTATCAGTGTTATGCAGAAGGAGAGTTGAGGAAGCTTGTTGTTAATGAATCAGAAGAAGAGGATACAGATTGGAAGACATTAGAGAGAATGGTGAAGGTGGGGTTGTGGTGTGTGCAGGATGATCCATCACTGCGTCCTTCAATGAAGAATGTTATCTTGATGTTGGAAGGTTGGAAACCTATTCCAACTCCTCCATCTCCTCTTGCTTCAACTTAA 2478 0.4197 MASKSPILIVLLFLSSILLLHSSLADAGDGITKIELGHSLSPKGNQSSSWLSSSGHFAFGFYPHAQGYGYAVGIWLLGEPDITLVWTANRNDPPLPSSSTLLLTIDGLVLQQGQKITNNVTGASMASMLDSGNFVIYDDSHVVVWQSFDHPTDTILGGQNLTAANRLVSSLSKTDHSTGLFYLIMQESDSNLVAYPLKTLPYAEDHYWAEIDNATTGSVQLSLNTEGFLCLREHQCFVNNTNLLKNSNSQKQNTTSIYRATFDFDGVFRLYEHQFDGEGNRRQLSVQIRWEALHDKCQINGFCGFNSYCSNTNMCHCYPGFVPISNNGMFLECKLNYSKDECQSNPDPSSLYDVTLLEHMSWSDFPYLVKKETTMEACEESCKEDCDCGGALYANNGGICSIYRLPLRYGRKVPNASDTATAIFKVPYHSGFLINQTHLDPDSHVVVDNKRSLILILSSSLGSVTLLCVIIAVSVFFNYRHHVYSYAKLSASSNLGITKECSLRSFSFDELVEATSGFTEEIGRGSYGAVYKGTITGDGSNKTVAVKRLERIADDEGEREFRAEVTAIARTHHRNLVKLVGYCIEGSRKLLVYEYVSNGCLANLLFKGKNHHHHHHDQALPWKERIKIALDVARGVQYLHEECGVRIVHCNLKPQNILIDEAWTAKISDFGLARLLKQPQQPEFLTDDEVRSSYLAPEWKNEASPSLSSCSSPLVSVKVDIYSYGVVVLEIVCRRRSIDVNVKCPEEVLLSSWVYQCYAEGELRKLVVNESEEEDTDWKTLERMVKVGLWCVQDDPSLRPSMKNVILMLEGWKPIPTPPSPLAST* 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3903 825 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 8 822 - -
Amo01g3903 825 Gene3D - 33 149 IPR036426 -
Amo01g3903 825 Gene3D - 152 292 IPR036426 -
Amo01g3903 825 Gene3D Transferase(Phosphotransferase) domain 1 596 815 - -
Amo01g3903 825 Pfam PAN-like domain 357 403 IPR003609 -
Amo01g3903 825 ProSitePatterns Protein kinases ATP-binding region signature. 522 547 IPR017441 GO:0005524
Amo01g3903 825 SMART blect_4 41 151 IPR001480 -
Amo01g3903 825 Pfam D-mannose binding lectin 83 164 IPR001480 -
Amo01g3903 825 Gene3D Phosphorylase Kinase; domain 1 491 595 - -
Amo01g3903 825 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 195 IPR036426 -
Amo01g3903 825 Pfam Protein tyrosine and serine/threonine kinase 518 807 IPR001245 GO:0004672|GO:0006468
Amo01g3903 825 SUPERFAMILY Protein kinase-like (PK-like) 499 812 IPR011009 -
Amo01g3903 825 PIRSF SRK 2 825 IPR024171 GO:0004674
Amo01g3903 825 PANTHER S-RECEPTOR KINASE-LIKE PROTEIN 8 822 - -
Amo01g3903 825 ProSiteProfiles Protein kinase domain profile. 516 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3903 Amo-Chr1 112578936 112581553 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3903 413 822 Receptor kinase-like Gene Family AT4G18250 32.850 9.12e-60 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Amo01g3903 PK_Tyr_Ser-Thr 8.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3903 - - ahf:112707637 1618.98