Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3902 ATGTTCATGCTCATGCTAATTCTCAAGCTGCTCATGGCTACCATTTCCATCATTCTTGTTCTGTTCTTGCTGCTAATACTAATAGCAAATGAAGCCACAGCTGTTGAGAGTATCATTGGGTTGGGCAAATCACTCTCTCCCAAAGGTAATAATAGTAATAGCAACAATCCATGTTCATGGTCATCAAGTCCTGGCAATTTTGCATTTGGTTTTTATCCTCACCGTTATGGCTACGCTCTTGGAATATGGCTTCTCGACACCGACAACACGGTGGTCTGGACCGCTAACCGCGACGGTTCGCCACTTCCCTCTACCTCCACCTTGCAGCTAACCACACAGGGCTTGCTTCTTCGCCAAGAAGAAGAAGCAGCACTCAATATCACTAACTTTTCATTTTCAAACCTTGGAGAAGAAGCAGCTTCAGCTTCCATGCTGGATGACGGTAACTTTAGCTTTGATCACCCAAGTGACACCATTTTAGGAGGACAAAGGTTGATCAATGAAAACAAATTGATCTCTGATGTCTCCAAAACAGACCATTCATCAATTGGGCTTTTCTATCTCATCATGCAGAGACATAACAACCTTGTCTCTTACCCTCTCCAAAGCCTCCCTTACCCTTCTGATGCTTACTTTGTCACCGGCACCAGCACCAGTGCTTCTTGCACCTTCACCTATCATCTTTACCTCAACCATACAACAGGCTCTCTACTTATTAGGAACGACACTAATTTGATGCCCATTCGGAGTCTTTTTGTTGCTGCTGAGAATGAGAACAAGAACAAGAACACAATTATTTATCGTGCAACTCTGGATTTTGATGGAGTTTTTCGACTCTATGCTCATGACATGGCTAACAAAGTCATCAGCATAGTAAAAACATGGCCTGATAATTCTTGTTCTGTGAAGGGCTTCTGCGGCTTCAACAGTTACTGTGCACTGGCTGATGAGAATCCATTTTGCTATTGTCTTCCGGGATTTGATTACCTTGATCCGAACCAGAACAGTCTTGGCTGCAAAAGAAACTTCTCAGAAGACAAGTGTAGTGAGGAAGAGTTTTACAGGATGGTTTCTTTGGATAAATTGGCCTGGCATGGTGACCGGTCTTATTTTCAGGCACAGATGGCAGATGAGGAACATTGCTCTTCTTCTTGTTTTATAGATTGCAATTGTTGGGCTGCTTCTTATGATCAGAGTAGCAAGATTTGTATGAAGCAGCAAACCCCTCTCAGATATGCAAGAAGGGTACAGTTGAACGAAGAAGTACCCTCCTTGAAATTCTTCAAGGTAGGAAACTTGAACTTGATTCATGTTAGTAGTGAGCCTGTGCCTGAGACTCCACTTTCTCATAAGATCATCAAGAATACTAGTAACAAAGCAATTCTGCATATTGTTTTTGTTACCTCCATTTTCACTCTGATTTTCTGCTCCACTATTGGGATACCTTGCCATTTGATGTCGAAGATTCGAGTTCTCAAGTACAGGAGGCTCTTGGAGATTGGGGACTTGGGCCTGAATGAGGAAGTGGCTTTGAGGAGATTTTCATACACTGAGCTCAAGAGAGCAACCAATGGTTTCAAGCAAGAATTGGGAAAGGGATCTTTTGGAGCAGTTTACAAAGGGGTTTTATACAAGGCGGGAAGAAGTAGGAGATTCATTGCGGTGAAGAGACTTGAGAAGTTGGTTGAAGATGGAGAAAYAGAGTTCCAAGCAGAGGTGAGAGCCATTGGAAAAACACACCARAGGAACCTTGTTCGCTTGCTTGGCTTCTGTGCCGAGGGTCCCAAAAGGCTTCTGGTCTATGAATACATGAGCAATGGTTCCCTTGGGAAGCTTCTCTTTGGCGATGAAAGGCTTCCAGATTGGGATGAAAGAGTCAGAATAGCTCTCGATATTGCAAGAGGGATCCTCTACCTGCATGAAGAATGTGAGGCACCCATCATCCATTGCGACATAAAGCCTCAAAATATCTTGATGGATGAGTTCTGGACTGCCAAAATATCTGATTTCGGGCTAGCAAAGCTTCTCATGCCGGACCAAACAAGAACCTTCACAGGGGTTAGAGGGACAAGAGGGTACTTGGCCCCTGAATGGAACAGGAACACACCAATAACAGTGAAGGCTGATATCTACAGCTATGGGATAGTGCTTCTTGAGACACCAAATGAGATTCATCTGTCTGGTTGGGCCTATAAGTGCTTTGTTGCTGGAGAGGTGCATAAGCTAGTTCATTGGGAAGAAGTGGATAAGAATGTTGTGGAAAATATGGTGAAGGTGGCACTGTGGTGTATCCAACATGAACCTGTTCTCCGGCCTTCAATGAAGAGTGTTGTGCTCATGCTTGAAGGGGTTACTGATGTGCCAGTTCCTCCTTCCCCAACTTCTAATTCCATTGAATGCCTGAATGGATGGAACACCTTGCCCCACACGAGAAGCTTCTTGATCTATCCCATTTCCATGGCTTCAAACCGCATTCATGTTCTGTTCTTATGGCTGCCCTTTTGTGTGGCCCTGGCAGCTGAAGCTGCAGTTGAGAAAAGTATTTGGTCGGGTGATCTTCTTTCTCCTCCTGACAGTAACACTACAAACCCATCTTCTTGGGTATCAAGTTCTGGTCACTTTGCATTCGGCTTTTACCGTCACGGTAACGGCCACGGCTACGCCATTGGAATATGGCTAATAGCTGGAACCAACGAGACGGTTGTGTGGACCGCTAACCGTGACGACCCTCCAATCTCATCTAACTCCACCTTGCAATTAACCGTGGATGGCCTACTTCTGAAGCAAGGTAGTGATGCCCAAGGACAGGTCTATGTGGCTTCAGAGCCAGCAGGTTCCGCATCCATGCTTGATTCCGGTAACTTTGTGATCTATAGTCAAGAAAGTTCTTCCTTTGTTGTGTGGCAAAGCTTTCATCACCCAACTGACACCATATTAGGAGGCCAGAATTTAACTATTCTGAACCAGCTAGTCTCTAGCAGGTCCACTTCAGACCGTTCCACTGGACACTACTATCTTGCCTATCAGCGTGATAACAACCTTGTTGCTTATCCCGTCAATAGCTCCTCACAGCCTCTTGATGCTTACTGGGCTTCCATGGATTACTTCCCGTATATGATTGGGGTGGAACAGTTGAGTCTTGACACTAAAGGCAATCTTTGCTTCATTGCCCCTACTCAATGCCTGGCTACTAACACTCACCACCAAAACAAGCCGCAGAACACTAGCTCAATCTACCGCGCAACTCTTGATGTTGATGGAAACCTGAGATTGTATGAGCACCTATTTGAGGATGTGGAGGGGAGTACAATTACAAACTCACCATCATCATCATCACTTGTTCATACGTTGTGGCAAGCCTTCACAGATGAATGCCAAATCAAGGGGTTTTGCGGCTCCAACAGTTTCTGCTCCAACATAAGAGGCAATGCTAGATGCCAGTGTTATCCTGGTTTCGTCCCCTACAACACCAAAACCAGTTATAGTAATGCCATGTTTCTGGAGTGCAAACTGAACTACACCAAAGATGATTGCGAAAGAAGTGGTGGCCGAAACTATTTGTTGTATAACACTGTTTCCTTGGAGGAGATGCGGTGGGATGACTGCCCATATTGGGCTAAACCAATGAGCATGGAAGCTTGTAACAAGTCTTGCAAGGAGGATTGTGATTGTGGAGCAGCATTATACACAAATGGCCAATGCAACAAATATAGTCTTCCAGTCAGATATGGCAGAAAGGTTCCAAATGCATCAGACACAGGCATGGCACTCTTCAAGGTTCCTTCGGGATATGTCATCGGGAAAAACACAACCACCTCATCTCCCAAGAATCCTAATGCCATTGTTAATAACCAGAGAGGTCTGATACTGATTCTAGCCTCTACTTTGGGTTCCATTTCATTTCTCTGTGTGGTCTTTGTTGTGTCTATTTTCTTCATTTATAGGAGCCAAGTTCATAGATTTACAAAGCTCTCTGCAAGTTCAAATCTTGGATTCACCGAGGAATGTTCGCTACGCTCGTTTTCCTTTGATGAACTTGTCAAAGCAACTAGTGGCTTCACAGAGGAGGTAGGCAGAGGATCCTTCGGAGCAGTTTATAGAGGCACAATAGGAGAGAATAGCAAAAGGATTGCCGTCAAGAGAATAGAGAAGTTTGTTGATGAAGGGGAGAGGGAATTCCGAGCCGAAATCACTGCCATTTCTAGAACTCATCATAGGAATCTGGTTAAGCTCATTGGCTTCTGTATTGAGGGGTCAAGGAAGCTTCTTGTCTATGAATATGTCAGCAATGGATCTCTTGCGAATCTTCTCTTCAAGACTAAGAAGCATCTGCCATGGAAAGAGAAACTCAAAATTGCATTGGATGTGGCCAGAGGAGTCCAGTATCTACATGAAGAGTGTGAAGTTCGTATTGTCCATTGTAATCTGAAGCCTCACAATATACTAATGGATGAACTATTGACGGCTAAGATATCAGATTTCGGATTGGCAAGGCTATCAAAGCCGGAACTTTCGAGTATTAGACCGGACAAGAACGAGGTTAGAACCGGGTACTTAGCACCTGAATGGCAAAAGGAGGCATTGGCATCGGTTAAAGCTGATGTTTTCAGTTATGGGATAGTACTGTTGGAGATTGTATGCCGCAGAAGGAGTATAGAAGTAAATGTTCCATCACCGGAGGAGGTGCTTCTTTCTAGTTGGGCATATCATTGCTTTGCGACTGAGCAGTTACATAAACTTGTTGCTTACAATGAGGATGAAAAGCAAGACATGGATTGGAAAACACTGGAAAGAATGGTGAAGGTGGGGCTGCTGTGTGTTCAAGATGACCCATCTCTGCGTCCTTCAATGAGGAATGTCATTTTGATGTTGGAAGGATGGAAAGATGTTCCAATTCCCCCATCCCCATCCTGTTAG 4917 0.4444 MFMLMLILKLLMATISIILVLFLLLILIANEATAVESIIGLGKSLSPKGNNSNSNNPCSWSSSPGNFAFGFYPHRYGYALGIWLLDTDNTVVWTANRDGSPLPSTSTLQLTTQGLLLRQEEEAALNITNFSFSNLGEEAASASMLDDGNFSFDHPSDTILGGQRLINENKLISDVSKTDHSSIGLFYLIMQRHNNLVSYPLQSLPYPSDAYFVTGTSTSASCTFTYHLYLNHTTGSLLIRNDTNLMPIRSLFVAAENENKNKNTIIYRATLDFDGVFRLYAHDMANKVISIVKTWPDNSCSVKGFCGFNSYCALADENPFCYCLPGFDYLDPNQNSLGCKRNFSEDKCSEEEFYRMVSLDKLAWHGDRSYFQAQMADEEHCSSSCFIDCNCWAASYDQSSKICMKQQTPLRYARRVQLNEEVPSLKFFKVGNLNLIHVSSEPVPETPLSHKIIKNTSNKAILHIVFVTSIFTLIFCSTIGIPCHLMSKIRVLKYRRLLEIGDLGLNEEVALRRFSYTELKRATNGFKQELGKGSFGAVYKGVLYKAGRSRRFIAVKRLEKLVEDGEXEFQAEVRAIGKTHQRNLVRLLGFCAEGPKRLLVYEYMSNGSLGKLLFGDERLPDWDERVRIALDIARGILYLHEECEAPIIHCDIKPQNILMDEFWTAKISDFGLAKLLMPDQTRTFTGVRGTRGYLAPEWNRNTPITVKADIYSYGIVLLETPNEIHLSGWAYKCFVAGEVHKLVHWEEVDKNVVENMVKVALWCIQHEPVLRPSMKSVVLMLEGVTDVPVPPSPTSNSIECLNGWNTLPHTRSFLIYPISMASNRIHVLFLWLPFCVALAAEAAVEKSIWSGDLLSPPDSNTTNPSSWVSSSGHFAFGFYRHGNGHGYAIGIWLIAGTNETVVWTANRDDPPISSNSTLQLTVDGLLLKQGSDAQGQVYVASEPAGSASMLDSGNFVIYSQESSSFVVWQSFHHPTDTILGGQNLTILNQLVSSRSTSDRSTGHYYLAYQRDNNLVAYPVNSSSQPLDAYWASMDYFPYMIGVEQLSLDTKGNLCFIAPTQCLATNTHHQNKPQNTSSIYRATLDVDGNLRLYEHLFEDVEGSTITNSPSSSSLVHTLWQAFTDECQIKGFCGSNSFCSNIRGNARCQCYPGFVPYNTKTSYSNAMFLECKLNYTKDDCERSGGRNYLLYNTVSLEEMRWDDCPYWAKPMSMEACNKSCKEDCDCGAALYTNGQCNKYSLPVRYGRKVPNASDTGMALFKVPSGYVIGKNTTTSSPKNPNAIVNNQRGLILILASTLGSISFLCVVFVVSIFFIYRSQVHRFTKLSASSNLGFTEECSLRSFSFDELVKATSGFTEEVGRGSFGAVYRGTIGENSKRIAVKRIEKFVDEGEREFRAEITAISRTHHRNLVKLIGFCIEGSRKLLVYEYVSNGSLANLLFKTKKHLPWKEKLKIALDVARGVQYLHEECEVRIVHCNLKPHNILMDELLTAKISDFGLARLSKPELSSIRPDKNEVRTGYLAPEWQKEALASVKADVFSYGIVLLEIVCRRRSIEVNVPSPEEVLLSSWAYHCFATEQLHKLVAYNEDEKQDMDWKTLERMVKVGLLCVQDDPSLRPSMRNVILMLEGWKDVPIPPSPSC* 1639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3902 1638 PANTHER S-RECEPTOR KINASE-LIKE PROTEIN 16 798 - -
Amo01g3902 1638 Pfam D-mannose binding lectin 900 987 IPR001480 -
Amo01g3902 1638 SMART serkin_6 1351 1628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3902 1638 SMART serkin_6 524 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3902 1638 Gene3D - 974 1126 - -
Amo01g3902 1638 ProSitePatterns Protein kinases ATP-binding region signature. 530 556 IPR017441 GO:0005524
Amo01g3902 1638 SUPERFAMILY Protein kinase-like (PK-like) 510 782 IPR011009 -
Amo01g3902 1638 Gene3D - 851 973 IPR036426 -
Amo01g3902 1638 SUPERFAMILY alpha-D-mannose-specific plant lectins 900 1032 IPR036426 -
Amo01g3902 1638 Gene3D Transferase(Phosphotransferase) domain 1 1428 1631 - -
Amo01g3902 1638 Gene3D Transferase(Phosphotransferase) domain 1 604 788 - -
Amo01g3902 1638 SUPERFAMILY Protein kinase-like (PK-like) 1333 1627 IPR011009 -
Amo01g3902 1638 ProSiteProfiles Bulb-type lectin domain profile. 853 970 IPR001480 -
Amo01g3902 1638 SMART blect_4 858 974 IPR001480 -
Amo01g3902 1638 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 206 IPR036426 -
Amo01g3902 1638 ProSiteProfiles PAN/Apple domain profile. 348 429 IPR003609 -
Amo01g3902 1638 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 822 1637 - -
Amo01g3902 1638 ProSiteProfiles EGF-like domain profile. 1121 1158 IPR000742 -
Amo01g3902 1638 PANTHER S-RECEPTOR KINASE-LIKE PROTEIN 822 1637 - -
Amo01g3902 1638 Pfam Protein tyrosine and serine/threonine kinase 1354 1622 IPR001245 GO:0004672|GO:0006468
Amo01g3902 1638 CDD STKc_IRAK 1357 1626 - -
Amo01g3902 1638 Gene3D - 156 292 IPR036426 -
Amo01g3902 1638 ProSiteProfiles Protein kinase domain profile. 1351 1628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3902 1638 ProSiteProfiles Bulb-type lectin domain profile. 36 165 IPR001480 -
Amo01g3902 1638 Pfam Protein kinase domain 527 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3902 1638 Gene3D Phosphorylase Kinase; domain 1 504 603 - -
Amo01g3902 1638 Pfam S-locus glycoprotein domain 261 328 IPR000858 GO:0048544
Amo01g3902 1638 Gene3D Phosphorylase Kinase; domain 1 1315 1427 - -
Amo01g3902 1638 ProSiteProfiles Protein kinase domain profile. 524 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3902 1638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 647 659 IPR008271 GO:0004672|GO:0006468
Amo01g3902 1638 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 16 798 - -
Amo01g3902 1638 CDD EGF_CA 1123 1152 - -
Amo01g3902 1638 ProSitePatterns Protein kinases ATP-binding region signature. 1357 1380 IPR017441 GO:0005524
Amo01g3902 1638 SUPERFAMILY EGF/Laminin 1122 1158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3902 Amo-Chr1 112540819 112555531 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3902 493 793 Receptor kinase-like Gene Family AT5G38280 41.796 1.48e-60 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Amo01g3902 PK_Tyr_Ser-Thr 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3902 - - aip:107633068 1049.27