Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3901 ATGCTCGATTCTGGAAACTTTGTACTATATAACCAGACTAAGGGTGTCATATGGCAGAGTTTCGATTACCCAACTGACACTATGTTGGGTGGTCAATCTCTACCTTCTGGAGGTCAATTGTTGTCTAGTTCTTCAGATACCAATCACTCAAGTGGACGATTTCGCCTCAAGATGCAGGATGATGGAGACTTCAGTCTGTATCCAGAATTCACAACTGACACGAGGAGGGATGCTTACTGGCCGTCAGATATATACCTTGGTGATAAGATAGTCAAAGGCAAAGCTTATCTTTACCTCAACAAAACAGGTTTGCTGGTGTCCAAGAATGGTAGCAATAGTGTTATTTCGAGCCATTATGGACCTTATTCTGGCGATAGTGTCGGCAGCAACCAGACCATTTATCGTGCAACCCTGGATCCTGATGGGGTTTTCAGGCTGTATGCTCATGATAAAGGTAGTGAGTCCAAGAAAGTTTTACAGTGGCCATGGGATGACGGATGTGAGGTAAAGGGTTACTGTGGCTTTAACAGCTACTGTACATTCAACGACGACAAACCGGACTGCTATTGTCTTGAAGGTTTCGACTTTATAGAGCCAGATCAACGCACTCTTGGCTGCAAAAGGAACTTCTCAATTGCAGAGTGTAGAGGTGAGAAAGGCAGCGCAGCTGCATCCTATTATAACATGGTCACAATGCTAGATATTCAATGGGAGGATCACGCTTATTTTGGGGCCTATATGGAGCACCAAGAAGAATGCTCTGATTCTTGTTTGGCTGATTGCAACTGTTGGGGTGCCCTTTATGAGAACGGGAACTGCTTGAAACAAGGGATGCCTTTCAGATATGTCTCAAGGAGAGTTGAAGGGTTCTCAGCCAACACAATGTTCTTAAAGGTGGGAAATATCACCCATAAAAACAGGAATCCTAATGATGTATTCATGCCTCTCCCAATCAGGAGTACTAGCAACAAAGCAGTTGTCACTATCATTGTCATCACATCGGTGTTCACTCTTCTTTTATGCTCAATGATCGCCATCTCTTGCCACCTGATTTACAAGATTCGAGTTCTAAGGCTTCAGAGGCAGATGGAGACTGGGAACTTAGGCCTAAATGAAGAAGTGGCCTTGAGAAGATTTTCATACAGTGAACTGAAGCGGGCAACAAATGGTTTCAAGCAAGAGCTGGGTAAGGGTTCTTTTGGAGCAGTCTACAAAGGCAGCTTATACAAAAGTAGAAGATCCATTGCAGTGAAGAGACTAGAGAAGCTAGTTGAAGAAGGAGAAAGAGAGTTCCAAGCAGAGGTGCGAGCCATCGGAAAAACACATCACAGGAACCTTGTTCGCTTGCTGGGATTTTGTGCCGAGGGTCCCAAGAGGCTTCTGGTCTATGAATACATGAGTAATGGTTCCCTTGGAAAGCTCATCTTTGGGGGTGAAAAGCGTCCAGATTGGGATGAGAGAGTGAGAATAGCACTGGATATTGCAAGAGGGATCCTTTATCTCCATGAAGAGTGTGAGGCACCCATTATTCACTGTGACATAAAGCCTCAAAATATCTTGATGGATGAATTTTGGACTGCAAAAATATCTGATTTTGGTCTAGCAAAACTCTTAATGCCAGATCAAACAAGAACCTTCACAGGGATTAGAGGGACAAGAGGGTATGTGGCTCCAGAATGGCACAAGAACACCCCAATATCAGTGAAGGCAGATGTTTACAGCTATGGTGTTGTGCTGCTGGAAGTTATATGCTGCAGAAGGAACATCGAAATTAGTGTTTCTGTACCAGAGGAGATTCTTCTCTCTAGCTGGACCTATAACTGCTTTGTTGCTAAAGAGTTGCATAAGCTAGTTCCCAGGGAAATAGTGGATAAGAATGTTTTGGAAAATATGGTGAAGGTGGCACTATGGTGTATCCAAGATGAGCCTGCTCTCCGGCCAACAATGAAGAGTGTGGTGTTGATGTTAGAAGGGGTTACTGATGTAGCTATTCCTCCTTGTCCGACAACCTCTATTTCTATGTAA 2025 0.439 MLDSGNFVLYNQTKGVIWQSFDYPTDTMLGGQSLPSGGQLLSSSSDTNHSSGRFRLKMQDDGDFSLYPEFTTDTRRDAYWPSDIYLGDKIVKGKAYLYLNKTGLLVSKNGSNSVISSHYGPYSGDSVGSNQTIYRATLDPDGVFRLYAHDKGSESKKVLQWPWDDGCEVKGYCGFNSYCTFNDDKPDCYCLEGFDFIEPDQRTLGCKRNFSIAECRGEKGSAAASYYNMVTMLDIQWEDHAYFGAYMEHQEECSDSCLADCNCWGALYENGNCLKQGMPFRYVSRRVEGFSANTMFLKVGNITHKNRNPNDVFMPLPIRSTSNKAVVTIIVITSVFTLLLCSMIAISCHLIYKIRVLRLQRQMETGNLGLNEEVALRRFSYSELKRATNGFKQELGKGSFGAVYKGSLYKSRRSIAVKRLEKLVEEGEREFQAEVRAIGKTHHRNLVRLLGFCAEGPKRLLVYEYMSNGSLGKLIFGGEKRPDWDERVRIALDIARGILYLHEECEAPIIHCDIKPQNILMDEFWTAKISDFGLAKLLMPDQTRTFTGIRGTRGYVAPEWHKNTPISVKADVYSYGVVLLEVICCRRNIEISVSVPEEILLSSWTYNCFVAKELHKLVPREIVDKNVLENMVKVALWCIQDEPALRPTMKSVVLMLEGVTDVAIPPCPTTSISM* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3901 674 Gene3D - 23 157 IPR036426 -
Amo01g3901 674 ProSitePatterns Protein kinases ATP-binding region signature. 395 418 IPR017441 GO:0005524
Amo01g3901 674 SMART serkin_6 389 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3901 674 SUPERFAMILY alpha-D-mannose-specific plant lectins 46 150 IPR036426 -
Amo01g3901 674 Gene3D Phosphorylase Kinase; domain 1 354 465 - -
Amo01g3901 674 Pfam Protein kinase domain 392 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3901 674 Gene3D Transferase(Phosphotransferase) domain 1 466 663 - -
Amo01g3901 674 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE LECRK1 1 672 - -
Amo01g3901 674 CDD STKc_IRAK 395 658 - -
Amo01g3901 674 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 672 IPR045874 GO:0004672
Amo01g3901 674 SUPERFAMILY alpha-D-mannose-specific plant lectins 1 83 IPR036426 -
Amo01g3901 674 Coils Coil 417 437 - -
Amo01g3901 674 Pfam D-mannose binding lectin 1 34 IPR001480 -
Amo01g3901 674 ProSiteProfiles Protein kinase domain profile. 389 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3901 674 Pfam S-locus glycoprotein domain 128 195 IPR000858 GO:0048544
Amo01g3901 674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 509 521 IPR008271 GO:0004672|GO:0006468
Amo01g3901 674 SUPERFAMILY Protein kinase-like (PK-like) 374 657 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3901 Amo-Chr1 112519618 112522070 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3901 339 657 Receptor kinase-like Gene Family AT3G55550 39.879 6.27e-68 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Amo01g3901 Pkinase 1.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3901 - - ahf:112707609 1357.04