Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3900 GTTCCACGCTTGAGAAAATCGCATTCAGGTCTTTCTTTTTCAACTTATAATTTTTACTCTTTTTATTTTATTTTTTTAATGTGTGAATTTCGCTTGTTGCTGACGGTGCTGGTGGTGGTGGGAAAGGGAGTGGAGGAGGGTGAGTGTGGGACTGTGGGAATAGTTAAGACTACACAAAATCCTATGGCATCAACACCTGCTCTGTTATTGCTAGTGTTGTTGATGCTATTTGCAAATGAAACCACAGCTGAGACAAACCACACTCACCTCATTTCTATAGGGTCTGTGATATCTCCTACAGGCACGCACGCTTCATGGGCATCACGTTCTGGCCTCTTTGCTTTTGGCTTTTACCCCCATGGTAATAGCTATGCTGTTGGAATATGGCTGCTTAATCAACCTAACCACACAATTATGTGGACTCATAATCGTGATAGTCCATCAGTGCCTTCAAATTCCACATTGAGATTGACCAAAGAAGGCGGGCTACTTCTTCTGCAAGGAAATGAAGACCCAGAGTTTCTCACTCCACTTTATTATTTATATCAGGCTAAAGTAGAAGTGGCTTCAGCATCTATGCTTGATTCTGGCAACTTTGTGCTTTATGATAAGAATTTTAGTATGTTATGGAGTAGTTTCCATAACTCAATGCCAAGTGACACCATATTAGGTGGCCAGAATTTGACAAGTGGAGCGAAGCTGGTCTCTAGTGTGTCACAATCAGACCATTCGAGTGGACATTTTTGGCTAAGAAGGCAGTTTGATTATGTACACCTAGCTGCTTGCCGTGTGAACAGCACATGTGAACCGGAGGATGCTTATTGGGCTAAAAACACATACTTTGAAGGTTATGGTTATCTACAGCTCAGTCTTAGCATTGAAGGTTCGCTTTGCCTACAAGATTATTCCTCTGGTTCTGAACTAGAGTGTTTAGCTAGTAGCAAGAACCTCACAGACAAGTCAAAGAATGCAACTTTTATCTACCGTGCTACACTTGATGAAGATGGGAACTTCAGATTGTATGCTCACCAATTCAAGGGAAATACTAGCTCAGGTGTGCAAACGCTGTGGAAAGCCATGGAGGGGGATAAATGTCAAGTCCCGCTTTGTGGCTTGAACAGTTACTGCTTCATCAAGAGCGACAAAGCCATGTGTCAGTGTTATCCTGGTTTCATCCGTATCAAGAGTGGTGGTAACGATACCAGGTTTCTCGACTGCGAACAGAACCACAGCAAAGATAATTGTGAGAGCATAGAGGACCCAACAACGATGTACAATATGACTTCCTTGAAGGATATCTACTGGGGTGGTTCTCCTTATTTGGTTGTGCCAATGGAGATGGAAACTTGCAAGAAGTCTTGTCAGAAAGACTGTGATTGCAGGGCGGTGTTATATAAGAGCGACATCTGCGAAAAATATAAGCTTCCACTTCTATATGGCAGAAGCTTTAAAGATGCATCAACGACGGCCTTCTTGAAGATGCCTTCAGGAATTGTCCTAAGTCCTACTTTAAACCAAACTGCTCTATCTCCAACAAAGCCCTGCCTCTTTGTTGATGACAAGAGAAGTCTTATAATGATTCTGTCCTTTACCCTGGGTTGGATTTCGTTTTTCGGTTTGGTCTTCGTATTGTATATTTTCATTATTTACAGGCGTCAAGTTCATAGGTATGCAATATTATCTGCAAGTGAAAATCTGGGATTTGTAGAAGAATGTTCCTTGCGTTCATTTTCCTTTGATGAACTTGTGAAATCAACTGGAGGCTTTGCAGAGGAGATAGGCAGAGGATCTTTTGGAGCGGTTTATAGAGGCACAATAGGTGACAGTAACAGAACGGTTGCTGTGAGGAGACTTGAAAAATTTGTTGATGAAGGGGAGAGGGAATTCCAAGCAGAAATCACTGCCATTGCTCGAACTCATCATAAAAATCTGGTGAAGCTCATTGGTTTCTGCATTGATGGATCTAGGAAGCTTCTTGTTTTTGAATATCTCAGCAATGGGTCTCTTGCAGATCTTCTCTTCAAGTCTCATATGACTATGGCTTGGAAAGAGAGATTAAAGATTGCATTAGACGTGGCTAGAGGAGTCTTATATCTGCATGAGAAGTGTGATGTTCGGATTATCCACTGCAACATAAAGCCTCAGAATATACTCATGGATGAAGTGTGGACTGCAAAGATATCCGATTTTGGATTTGCAAGGCTGTTGAAACCCAGCTATTCAAGAATGAAGAAAATGGATGACAAGAGAAGTAGGTACTTGGCGCCTGAATGGCAGAAGGATGAATCAGTGTCGGTTAAAGCTGATGTTTATAGTTTTGGGGTGGTGTTACTGGAGATTGCATGCCGTAGAAGCAGTATTGATATGAATGTTGCATCGCCAGAAGAGATAGTTCTTTCCAGCTGGGTATATAAATGCTATGCGGCGGGGCAGTTGAATAAGCTTGCGGCAGATGATGAAGGCAAAGATGTAGATTGGAAAATACTGGAAAGAATGGTGAAGTTGGGGTTGTGGTGTGTTCAAGACAAACCATCTCTTCGTCCCACAATGAAGGATGTGATCTTAATGTTGGAAGGACTGAAAGATATTCCGGTTCCTCCCTCTCCAGCCTTCTTTGTTGAATAA 2625 0.421 VPRLRKSHSGLSFSTYNFYSFYFIFLMCEFRLLLTVLVVVGKGVEEGECGTVGIVKTTQNPMASTPALLLLVLLMLFANETTAETNHTHLISIGSVISPTGTHASWASRSGLFAFGFYPHGNSYAVGIWLLNQPNHTIMWTHNRDSPSVPSNSTLRLTKEGGLLLLQGNEDPEFLTPLYYLYQAKVEVASASMLDSGNFVLYDKNFSMLWSSFHNSMPSDTILGGQNLTSGAKLVSSVSQSDHSSGHFWLRRQFDYVHLAACRVNSTCEPEDAYWAKNTYFEGYGYLQLSLSIEGSLCLQDYSSGSELECLASSKNLTDKSKNATFIYRATLDEDGNFRLYAHQFKGNTSSGVQTLWKAMEGDKCQVPLCGLNSYCFIKSDKAMCQCYPGFIRIKSGGNDTRFLDCEQNHSKDNCESIEDPTTMYNMTSLKDIYWGGSPYLVVPMEMETCKKSCQKDCDCRAVLYKSDICEKYKLPLLYGRSFKDASTTAFLKMPSGIVLSPTLNQTALSPTKPCLFVDDKRSLIMILSFTLGWISFFGLVFVLYIFIIYRRQVHRYAILSASENLGFVEECSLRSFSFDELVKSTGGFAEEIGRGSFGAVYRGTIGDSNRTVAVRRLEKFVDEGEREFQAEITAIARTHHKNLVKLIGFCIDGSRKLLVFEYLSNGSLADLLFKSHMTMAWKERLKIALDVARGVLYLHEKCDVRIIHCNIKPQNILMDEVWTAKISDFGFARLLKPSYSRMKKMDDKRSRYLAPEWQKDESVSVKADVYSFGVVLLEIACRRSSIDMNVASPEEIVLSSWVYKCYAAGQLNKLAADDEGKDVDWKILERMVKLGLWCVQDKPSLRPTMKDVILMLEGLKDIPVPPSPAFFVE* 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3900 874 Gene3D Transferase(Phosphotransferase) domain 1 664 866 - -
Amo01g3900 874 SUPERFAMILY alpha-D-mannose-specific plant lectins 125 278 IPR036426 -
Amo01g3900 874 Gene3D - 219 361 IPR036426 -
Amo01g3900 874 Pfam Protein tyrosine and serine/threonine kinase 590 854 IPR001245 GO:0004672|GO:0006468
Amo01g3900 874 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 62 871 - -
Amo01g3900 874 CDD STKc_IRAK 593 860 - -
Amo01g3900 874 PANTHER S-RECEPTOR KINASE-LIKE PROTEIN 62 871 - -
Amo01g3900 874 SMART blect_4 97 216 IPR001480 -
Amo01g3900 874 ProSiteProfiles Protein kinase domain profile. 587 871 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3900 874 Pfam D-mannose binding lectin 137 229 IPR001480 -
Amo01g3900 874 SUPERFAMILY Protein kinase-like (PK-like) 569 867 IPR011009 -
Amo01g3900 874 Gene3D Phosphorylase Kinase; domain 1 554 663 - -
Amo01g3900 874 PIRSF SRK 59 874 IPR024171 GO:0004674
Amo01g3900 874 Gene3D - 96 214 IPR036426 -
Amo01g3900 874 ProSiteProfiles Bulb-type lectin domain profile. 88 214 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3900 Amo-Chr1 112515759 112519589 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3900 574 872 Receptor kinase-like Gene Family AT5G38280 38.762 9.38e-61 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Amo01g3900 PK_Tyr_Ser-Thr 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3900 - - aip:107630435 1515.75