Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3870 ATGGCATCTGATCTGAGTTCAGGGCTGTCCAAGAAAACGTTTGTTTTTGGTTTGAAGGCATGGGAARTAATGGGGATACTAGTTGGGTTGTTCATTGTAATCATTCTCGTAGTGCTATCYATATGTCTCACATCAAGAAAGAAATCCAGAAGAGTCAATGGAATGATTCCCCTTAGTCGCATGTTATCTGTTTCGGATGAGATCAAAGAGATTAGAGTTGATCAAGCTTCGGCAAATAATCAACCRCAAAGTGGTGCTTTTATGAGTCTGTATGACAAATTTAGTGACAGGGACTCTGAAAAGGTATTGATCCAAACAAAGAATGGGGATAATAGCAGTCACTCAGGTTCATTTATCCATGCCGAGAAAGACACAGGTGGTTCCCAATCAGGAGAAGAAAGRGGAGCCAAGTCTGTTTCTGCTTATAGAATTTCTTCAGCTTCACCTTTATCTGGTCTGCCTGAGTTCTCTCACCTTGGCTGGGGGCACTGGTTTACATTAAGGGACCTAGAAGTTGCAACGAACAGGTTTTCGAAAGACAATGTTATCGGRGAAGGGGGATATGGAGTTGTTTATCAAGGCAAGTTAATCAATGGGAGTCCTGTGGCTGTTAAGAAGCTCCTCAATAATCTAGGACAAGCCGAGAAGGAATTTAGGGTGGAAGTTGAGGCTATTGGTCATGTGCGGCACAAGAACTTAGTCAGACTTCTAGGTTATTGCATTGAAGGCACTCACAGGTTGTTAGTTTATGAGTATGTTAACAACGGCAATTTAGAGCAATGGCTTCATGGAGCCATGCGGCAGTATGGTTTTCTCACTTGGGATGCTCGGATTAAAATTCTTCTTGGAACAGCTAAAGCGTTGGCTTACTTGCACGAGGCAATCGAACCAAAAGTAGTACATCGAGATATTAAGTCYAGCAATATTTTAATTGATGATGATTTCAATGCCAAAATATCCGACTTTGGGCTGGCTAAGTTACTTGGTGCTGGAAAAAGTCATATTACAACTCGAGTAATGGGAACTTTCGGATATGTAGCTCCTGAATATGCCAATTCTGGCTTATTGAATGAGAAGAGTGATGTTTATAGCTTCGGGGTATTGCTCCTCGAAGCAATAACTGGAAGAGACCCAGTGGATTATAGCCGACCAGCAGCTGAGGTAAATCTTGTTGACTGGCTCAAGATGATGGTAGGCAACAGGCGAGCAGAGGAGGTGGTGGATCCCAACATTGAGACCAGGCCATCAACAAGTGCCCTGAAAAGGGTCCTTTTGACTGCMTTGAGGTGTGTTGATCCAGATTCTGAGAAAAGACCGAAAATGAGTCAAGTTGTCCGAATGCTTGAATCAGAGGAATATCCCGTACCTAGAGAGGACCGAAGACGCCGAAAAAATCCGGCCGGAAATGCGGAGCTGGATGGTCAGAAGGAGGCTTCTGATACAGATAAGAGCGACAATCCAGATTCCAAGCCAAATGGCAGAAGTAACCAAKGGAAGTAA 1500 0.4333 MASDLSSGLSKKTFVFGLKAWEXMGILVGLFIVIILVVLSICLTSRKKSRRVNGMIPLSRMLSVSDEIKEIRVDQASANNQPQSGAFMSLYDKFSDRDSEKVLIQTKNGDNSSHSGSFIHAEKDTGGSQSGEERGAKSVSAYRISSASPLSGLPEFSHLGWGHWFTLRDLEVATNRFSKDNVIGEGGYGVVYQGKLINGSPVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRLLVYEYVNNGNLEQWLHGAMRQYGFLTWDARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKISDFGLAKLLGAGKSHITTRVMGTFGYVAPEYANSGLLNEKSDVYSFGVLLLEAITGRDPVDYSRPAAEVNLVDWLKMMVGNRRAEEVVDPNIETRPSTSALKRVLLTALRCVDPDSEKRPKMSQVVRMLESEEYPVPREDRRRRKNPAGNAELDGQKEASDTDKSDNPDSKPNGRSNQXK* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3870 499 MobiDBLite consensus disorder prediction 105 137 - -
Amo01g3870 499 ProSitePatterns Serine/Threonine protein kinases active-site signature. 299 311 IPR008271 GO:0004672|GO:0006468
Amo01g3870 499 SUPERFAMILY Protein kinase-like (PK-like) 161 454 IPR011009 -
Amo01g3870 499 ProSiteProfiles Protein kinase domain profile. 177 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3870 499 CDD STKc_IRAK 183 449 - -
Amo01g3870 499 Pfam Protein kinase domain 178 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3870 499 SMART serkin_6 177 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3870 499 Gene3D Phosphorylase Kinase; domain 1 157 252 - -
Amo01g3870 499 MobiDBLite consensus disorder prediction 105 124 - -
Amo01g3870 499 Gene3D Transferase(Phosphotransferase) domain 1 253 464 - -
Amo01g3870 499 PANTHER OS01G0323000 PROTEIN 2 499 - -
Amo01g3870 499 MobiDBLite consensus disorder prediction 447 489 - -
Amo01g3870 499 MobiDBLite consensus disorder prediction 447 499 - -
Amo01g3870 499 ProSitePatterns Protein kinases ATP-binding region signature. 183 206 IPR017441 GO:0005524
Amo01g3870 499 PANTHER RECEPTOR-LIKE KINASE PLANT 2 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3870 Amo-Chr1 112122335 112126409 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3870 113 451 Trihelix Transcription Factor Family AT1G70460 47.384 5.43e-97 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Amo01g3870 Pkinase 6.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3870 - - gmx:100793499 878.241