Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3866 ATGGGTTGCTTTGGCTTCTGCAAACAAGATGATAGTTATAAACCTTCTGATAACCGATCCTTAATGCCAACAAATTCTACTGGGAATACCGGTTATAGTACCAGACCAACTGCAGTAACCACTCCTAAGATTATAGAATTCAAACCGATTGCCGTCCCTTCCCTTTCATTAGATGAATTGAAGTCTTTGACAGACAATTTTGGGGCAAAATGTTTCATTGGTGAGGGTGCATATGGGAAAGTGTATCGCGCAACATTGAAAGACGGCCGTGATGTTGTAATTAAGAAGTTAGATTCCAGCAGGCAACCAGACCAAGAATTTCTTGCACAGGTCTCGATCGTATCGAGGTTAAAGCATGAAAATGTTGTTGAACTAGTTAGCTATTGTGTTGATGGTCCTCTTCGCGCCCTTGCCTATGAGTATGCTCCTAAAGGATCCCTTCATGATATTCTACATGGACGCAAAGGCGTGAAGGGTGCGCAGCCTGGTCCAGTTCTCTCATGGGCTCAAAGAGTCAAAATTGCTGTTGGAGCGGCCAGAGGACTTGAATATCTTCATGAGAAGGCAGAGATTCATATCATCCATCGATACATCAAGTCGAGCAACATAATGCTTTTTGATGATGATGTTGCGAAGATTGCTGATTTTGATTTGTCAAATCAAAACCCGGATGCTGCAGCGCGTCTCCATTCTACCCGTGTTCTAGGCACCTTTGGTTATCATGCTCCAGAATATGCAATGACTGGAACACTCACTGCCAAGAGTGATGTGTATAGTTTTGGAGTGATATTGCTGGAGCTGTTAACTGGCCGTAAACCTGTTGATCACACGCTGCCTCGAGGACAGCAAAGCCTTGTGACATGGGCAACACCAAGGCTTAGTGAAGATAAGGTGAAGCAGTGTGTTGATGTTAGATTAAAGGGAGACTACCCTCCAAAGGCAGTAGCAAAGTTGGCTGCTGTTGCTGCGTTGTGTGTCCAATATGAAGCCGAGTTCCGGCCAAACATGAGCATTGTAGTGAAAGCTCTACAACCACTACTCAATACCCGTTCCGGTCAACCAAAGGAATCAGCACACAAGATGTAA 1086 0.4457 MGCFGFCKQDDSYKPSDNRSLMPTNSTGNTGYSTRPTAVTTPKIIEFKPIAVPSLSLDELKSLTDNFGAKCFIGEGAYGKVYRATLKDGRDVVIKKLDSSRQPDQEFLAQVSIVSRLKHENVVELVSYCVDGPLRALAYEYAPKGSLHDILHGRKGVKGAQPGPVLSWAQRVKIAVGAARGLEYLHEKAEIHIIHRYIKSSNIMLFDDDVAKIADFDLSNQNPDAAARLHSTRVLGTFGYHAPEYAMTGTLTAKSDVYSFGVILLELLTGRKPVDHTLPRGQQSLVTWATPRLSEDKVKQCVDVRLKGDYPPKAVAKLAAVAALCVQYEAEFRPNMSIVVKALQPLLNTRSGQPKESAHKM* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3866 361 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 357 - -
Amo01g3866 361 SUPERFAMILY Protein kinase-like (PK-like) 47 343 IPR011009 -
Amo01g3866 361 MobiDBLite consensus disorder prediction 16 35 - -
Amo01g3866 361 CDD STKc_IRAK 73 346 - -
Amo01g3866 361 Pfam Protein tyrosine and serine/threonine kinase 73 343 IPR001245 GO:0004672|GO:0006468
Amo01g3866 361 ProSiteProfiles Protein kinase domain profile. 67 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3866 361 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524
Amo01g3866 361 Gene3D Transferase(Phosphotransferase) domain 1 143 360 - -
Amo01g3866 361 Gene3D Phosphorylase Kinase; domain 1 31 141 - -
Amo01g3866 361 MobiDBLite consensus disorder prediction 12 35 - -
Amo01g3866 361 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3866 Amo-Chr1 112107257 112111505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3866 49 349 Receptor kinase-like Gene Family AT4G02010 48.571 2.01e-87 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Amo01g3866 PK_Tyr_Ser-Thr 2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3866 K13436 - gmx:547595 609.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3866 01 112107257 112111505 Amo11g2511 11 131909482 131911722 hybridization