Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3863 ATGGAAGCCAGATTTGGGGGAAAGAATCAGTTTTTATATGGAGCTGTGGTTCCAGAAATGAAAGGTGTTGGGAAGAGGAGTTTGGAGTGGGATTTGAARGATTGGAGATGGGACGGTGATCTCTTCACTGCTCAACAACTCAATTCGGTTCCATCAGATTGTAGAAGCCGCCAATTTTTCCCACCAAATCCTGAGATTCATGCAAATAATAATGCTATTAATGCATCTAACAGTATCTCTTCTTCAATCAACCCTGTTGAAGAAGGGAAGAGAGAGTTGGAGAAGAAGAGAAGAGCTGTTGTAATAGGTGAAGGCGAAGAAAGGGAGGAGCTGAATGATGAAGGAGGAGGAGGAGGTGGTGGTGGTAGTTCTCTTAATTTGAATCTTGGAGCTCAGGTTTACCCAATCATGGTGGAAGGGGATGAGAAAAGTGGAAAGAAGACAAAGGTAGTAGAGACAGCTGCTACAACTTCTAACCGTGCAGTTTGTCAGGTACAAGATTGTAGGGTTGATCTTAGTGGTGCAAAGGATTACCACCGTCGACATAAAGTTTGTGATGTGCATTCTAAAGCTACTAAGGCCCTTGTGGGAAATGTTATGCAGCGGTTTTGTCAACAGTGTAGCAGGTTTCATGCGCTTGAGGAGTTTGATGAAGGGAAGCGGAGTTGTCGTAGGCGTCTGGCAGGCCACAATAGGAGGAGGAGGAAAACGCATCCTGATGCAGCTGGAGTTAATGGAGGTTCTCTGAATGGTGAAAGGGGTAGTAGCTATCTGTTGATGAGTTTGTTACGGATACTGTCCAATATGCATTCAAACGGGTCAGATAATACAAGGAACCAGGATATTCTCTCTCATCTACTGGGGAACCTGGCAAATCTGGCGGGTACACTTAATGAAAGAAGTATAGCCTCTTTGCTGGAGGGATCTCAAGGTTTGGTAAATTCTAGGACACCTGAAGCTGCGCTCAATGTGCCAAATCTTAATTCAAATGGTCCTGAAGCCTCAAGGCCTTCTGGTTCTCCCATCAAGACGGGTAATGGTGCCATCCGGCAGGATCCTCCAAGGTCTATGGTACAGTGTGAGGCAGCACCTTTGAATGCTGTCACAGAGAAATGCGTACCTTTAAGTCATGGTGCAGTGGCAAAGTTGAAACCTTCGGGAATCCAGCCCTCCTCAAATGTACTTCTATCGAGGGATAGCCAACCATCCCAGTTAATTGCAGCAGATACTAGCGTTGGAAGGGATCACTTAAATAACATCGACCTGAATAATGTATATGATGATACACAGGATTGTGCCGAGAATCCTAAGTCGTCTTCTGCTCCCGTGGGAGAGGTTAGGTCTCTTGATCATCCTTTGTGGTTGCAATGTAACTCTCTCAAATCAAGTCCACCGCAGACAAGTATAAACTCAGATTCAACCTCCACCCAGTCACCATCTAGTTCTAGTGGAGAAGCTCAGTCTCGCACAGATCGAATAGTTTTCAAACTCTTTGGCAAGGATCCAAGTGATTTTCCCCATGTTCTCCGATCACAGATCCTCAATTGGTTATCACACAGTCCTACCGAGATTGAGAGCTATATAAGGCCAGGCTGTATCGTATTAACAATATATCTCCGCCTCGAGAAATCTGCATGGGAGGAGCTCTCCTGTAACCTCGGATCCAGCTTGAGCAAGCTTGCTTCAAATGATTCTTTCTGGACAACAGGTTGGGTATATACAAGGGTGCAACAATCTGTAGCTTTTTTGTATAACGGCCAAGTTGTCTTAGACGTGCCGTTGCATCTTAGAAGCCCACAGAATTGTAGGATTTCATGCATTAAACCACTTGCTGTTCCTAAAAATGCAAATGCTAAGTTTACTGTGAAAGGGTTCAACCTTTTCAGATCCAGCACAAGGATGCTTTGTGCTTTTGAAGGGAAGTATCTGGTACATGATAGTTCTCATGATTTGATTGATGTAGCCGATGTATCCGATGCAGCTATCCAACATCTCAGCTTCTCTTGTCAAATACCAAATGTAACTGGCAGGGGGTTTGTTGAGGTGGAAGATCATGGTCTTAGCAGCTGTTCCTTTCCATTTATAGTCGCAGAGCAAGAAATTTGTACAGAGATCTGCAAGCTGGAGAATGTGATTGAGGCGGCAGATGCCACTGATGACYTKTTGTTAAAGAGCAAACAAATAGAAGAAAAGACTCGAGCTCTGGAATTCTTACAAGAAATGGGTTGGCTTCTTCATAGAAGTCGTTTGAATGTTAGGCTAGGTACCCTGGCGCCTACTCAGGATCCCTTTCATTTCAGTCGGTTCGTGTGGCTTGTTGATTTCTCCATGGACCATGATTGGTGTGCAGTGGTGAAAAAACTCTTGGACATTATATTTGAGGATGGTGTTGATGTAGGAGATCATACCTCCATCGAGCTCGCGTTATTGGACATGGGTCTTCTACACAAAGCTGTGAAGAGAAATTCAAGGCCTATGGTGGAACTATTGTTAAAATTTGTGCCTACGAAAAGTTCAGCTGGGGCAGCAAAATTCTTATTTAGACCTGATAATGTTGGGCCGGCAGGGTTAACTCCACTTCATGTCGCAGCAAGCATGAAAGGCTCTGAGAATGTCTTGGATGCATTAACTGATGATCCAGGAATGGTTGGAATTGAAGCATGGAAAAGTGCTAGGGACAATACAGGCTTGACGCCTAACGATTATGCAAGCCTCCGCGGCTATTTCTCCTACATTCAACTTGTCCAGAAGAACACCAACAAAAGGCGCGAAGGACAACATGTGCTTGATATCCCTGGCGCCATTGTAGACAGTAACACAAAGCAGAAGCAACTAGATGTGAACAGGACATCTAAGCTTGCAAGTTTGCACACCGAGAAGCTCGAAACCACAGTGATGGCGAGTCAATGCGGGATATGCCAGCACAGGCTGGCTTATGGCGGCACAAGAGCGGCACTGGTTTATCGGCCGGCGATGCTCTCACTTGTGGCCATTGCAGCTGTTTGTGTATGTGTGGCATTGCTCTTCAAAAGCTCACCTAAAGTTTATTATGTCTTCCAGCCTTTCAACTGGGAATCACTGGGATATGGTTATATCTAA 3099 0.4492 MEARFGGKNQFLYGAVVPEMKGVGKRSLEWDLKDWRWDGDLFTAQQLNSVPSDCRSRQFFPPNPEIHANNNAINASNSISSSINPVEEGKRELEKKRRAVVIGEGEEREELNDEGGGGGGGGSSLNLNLGAQVYPIMVEGDEKSGKKTKVVETAATTSNRAVCQVQDCRVDLSGAKDYHRRHKVCDVHSKATKALVGNVMQRFCQQCSRFHALEEFDEGKRSCRRRLAGHNRRRRKTHPDAAGVNGGSLNGERGSSYLLMSLLRILSNMHSNGSDNTRNQDILSHLLGNLANLAGTLNERSIASLLEGSQGLVNSRTPEAALNVPNLNSNGPEASRPSGSPIKTGNGAIRQDPPRSMVQCEAAPLNAVTEKCVPLSHGAVAKLKPSGIQPSSNVLLSRDSQPSQLIAADTSVGRDHLNNIDLNNVYDDTQDCAENPKSSSAPVGEVRSLDHPLWLQCNSLKSSPPQTSINSDSTSTQSPSSSSGEAQSRTDRIVFKLFGKDPSDFPHVLRSQILNWLSHSPTEIESYIRPGCIVLTIYLRLEKSAWEELSCNLGSSLSKLASNDSFWTTGWVYTRVQQSVAFLYNGQVVLDVPLHLRSPQNCRISCIKPLAVPKNANAKFTVKGFNLFRSSTRMLCAFEGKYLVHDSSHDLIDVADVSDAAIQHLSFSCQIPNVTGRGFVEVEDHGLSSCSFPFIVAEQEICTEICKLENVIEAADATDDXLLKSKQIEEKTRALEFLQEMGWLLHRSRLNVRLGTLAPTQDPFHFSRFVWLVDFSMDHDWCAVVKKLLDIIFEDGVDVGDHTSIELALLDMGLLHKAVKRNSRPMVELLLKFVPTKSSAGAAKFLFRPDNVGPAGLTPLHVAASMKGSENVLDALTDDPGMVGIEAWKSARDNTGLTPNDYASLRGYFSYIQLVQKNTNKRREGQHVLDIPGAIVDSNTKQKQLDVNRTSKLASLHTEKLETTVMASQCGICQHRLAYGGTRAALVYRPAMLSLVAIAAVCVCVALLFKSSPKVYYVFQPFNWESLGYGYI* 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3863 1032 MobiDBLite consensus disorder prediction 105 124 - -
Amo01g3863 1032 ProSiteProfiles Zinc finger SBP-type profile. 160 237 IPR004333 GO:0003677
Amo01g3863 1032 Gene3D - 782 931 IPR036770 -
Amo01g3863 1032 MobiDBLite consensus disorder prediction 227 249 - -
Amo01g3863 1032 Pfam SBP domain 163 236 IPR004333 GO:0003677
Amo01g3863 1032 MobiDBLite consensus disorder prediction 322 353 - -
Amo01g3863 1032 MobiDBLite consensus disorder prediction 458 485 - -
Amo01g3863 1032 SUPERFAMILY SBT domain 161 241 IPR036893 GO:0003677|GO:0005634
Amo01g3863 1032 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 13 1031 IPR044817 GO:0003677
Amo01g3863 1032 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 13 1031 - -
Amo01g3863 1032 MobiDBLite consensus disorder prediction 322 345 - -
Amo01g3863 1032 Gene3D - 154 224 IPR036893 GO:0003677|GO:0005634
Amo01g3863 1032 SUPERFAMILY Ankyrin repeat 812 916 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3863 Amo-Chr1 112045402 112051536 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3863 1 1030 SBP-box Gene Family AT3G60030 46.616 0.0 800
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Amo01g3863 SBP 5.8e-29 No_clan